Non-Coding RNA Search

Ss1.1-rnmm39c_k23.5S

Sequence:


               
               GAGATGGAGCCCGGCAGCGGTAGCATGAGCTGGTTTGTGGACACGGCCGAGCGCTACGCC
CTGGCTGGCCGGCCGCTGGCTGAGCTCTGTGAGCACAACGCGAAAGTGGCTCGGGAGCTC
GGCCGCAACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGGAGCCCGGCAGCGGTAGCATGAGCTGGTTTGTGGACACGGCCGAGCGCTACGCC
CTGGCTGGCCGGCCGCTGGCTGAGCTCTGTGAGCACAACGCGAAAGTGGCTCGGGAGCTC
GGCCGCAACCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-132, + strand, RNAz p=0.860618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-132, + strand, RNAz p=0.860618

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-132, gnl|bosTau2|chr25 (1211578-1211709)
               

               
               1-132, gnl|canFam2|chr6 (42930710-42930464)
               

               
               1-132, gnl|danRer3|chr24 (30800764-30800533)
               

               
               1-132, gnl|echTel1|scaffold_323419 (5843-6089)
               

               
               1-132, gnl|fr1|chrUn (101944877-101945122)
               

               
               1-132, gnl|galGal2|chr14 (1943875-1943626)
               

               
               1-132, gnl|hg17|chr16 (676741-676987)
               

               
               1-132, gnl|Hg17|chr16 (676876-676745)
               

               
               1-132, gnl|mm7|chr17 (24009870-24009624)
               

               
               1-132, gnl|Mm7|chr17 (24009733-24009864)
               

               
               1-132, gnl|monDom2|scaffold_49 (9776649-9776895)
               

               
               1-132, gnl|panTro1|chr18 (717147-717393)
               

               
               1-132, gnl|rheMac2|chr20 (678778-679024)
               

               
               1-132, gnl|rn3|chr10 (15092145-15091899)
               

               
               1-132, gnl|tetNig1|chr2 (4729887-4730117)
               

               
               1-132, gnl|xenTro1|scaffold_591 (676479-676710)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr25 (1211578-1211709)
               

               
               1-132, gnl|canFam2|chr6 (42930710-42930464)
               

               
               1-132, gnl|danRer3|chr24 (30800764-30800533)
               

               
               1-132, gnl|echTel1|scaffold_323419 (5843-6089)
               

               
               1-132, gnl|fr1|chrUn (101944877-101945122)
               

               
               1-132, gnl|galGal2|chr14 (1943875-1943626)
               

               
               1-132, gnl|hg17|chr16 (676741-676987)
               

               
               1-132, gnl|Hg17|chr16 (676876-676745)
               

               
               1-132, gnl|mm7|chr17 (24009870-24009624)
               

               
               1-132, gnl|Mm7|chr17 (24009733-24009864)
               

               
               1-132, gnl|monDom2|scaffold_49 (9776649-9776895)
               

               
               1-132, gnl|panTro1|chr18 (717147-717393)
               

               
               1-132, gnl|rheMac2|chr20 (678778-679024)
               

               
               1-132, gnl|rn3|chr10 (15092145-15091899)
               

               
               1-132, gnl|tetNig1|chr2 (4729887-4730117)
               

               
               1-132, gnl|xenTro1|scaffold_591 (676479-676710)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-132, gnl\|bosTau2\|chr25 (1211578-1211709)
	1-132, gnl\|canFam2\|chr6 (42930710-42930464)
	1-132, gnl\|danRer3\|chr24 (30800764-30800533)
	1-132, gnl\|echTel1\|scaffold_323419 (5843-6089)
	1-132, gnl\|fr1\|chrUn (101944877-101945122)
	1-132, gnl\|galGal2\|chr14 (1943875-1943626)
	1-132, gnl\|hg17\|chr16 (676741-676987)
	1-132, gnl\|Hg17\|chr16 (676876-676745)
	1-132, gnl\|mm7\|chr17 (24009870-24009624)
	1-132, gnl\|Mm7\|chr17 (24009733-24009864)
	1-132, gnl\|monDom2\|scaffold_49 (9776649-9776895)
	1-132, gnl\|panTro1\|chr18 (717147-717393)
	1-132, gnl\|rheMac2\|chr20 (678778-679024)
	1-132, gnl\|rn3\|chr10 (15092145-15091899)
	1-132, gnl\|tetNig1\|chr2 (4729887-4730117)
	1-132, gnl\|xenTro1\|scaffold_591 (676479-676710)