Ss1.1-rnmm40c_l17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCTGCCAAACATCTGGATCCACCTGGGCACCAGGAGCGGTTGAATTTCTACCATTCA CGCGCCTTTTTACAATTTCTCCCGACCTCCCACATCCGTAAAACTCACTGACTCTTTTAC TACACGTTTTATGAGACCAAGACATTTTCTAGGAAGATGGTGGCAGAAAAAGAGACCCTG AGCTTAAGCAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCCG CTCCCGGTGCACCAGCCGCACCCCCTGGTCTCTGAGGGCTTCACAGTCAAAGCCATGATG AAAAACTCAGTCGTGAGAGGCCCACCAACTGCAGGAGCATTTAAAGAAAGACCAACCAAG CCTACAGCATTTCGAAAATTTTATGAACGAGGAGACTTCCCAATTGCCCTTGAACATGAT TCGAAAGGAAACAAAATAGCGTGGAAGGTAGAAATTGAAAAGCTGGATTACCATCATTAT CTGCCTCTGTTTTTTGACGGGCTCTGTGAAATGACATTTCCCTATGAATTTTTTGCTCGG CAAGGAATCCACGACATGCTGGAACACGGGGGGAACAAGATTCTTCCTGTCATTCCACAG CTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGCGTCACT CTCAAAGTCCTCCAGCATCTGGTTGTGTCGGCTGAGATGGTGGGTGAAGCTCTGGTGCCC TATTACCGTCAAATCCTCCCCATCCTGAACATCTTTAAGAATATGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCTGCCAAACATCTGGATCCACCTGGGCACCAGGAGCGGTTGAATTTCTACCATTCA CGCGCCTTTTTACAATTTCTCCCGACCTCCCACATCCGTAAAACTCACTGACTCTTTTAC TACACGTTTTATGAGACCAAGACATTTTCTAGGAAGATGGTGGCAGAAAAAGAGACCCTG AGCTTAAGCAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGCTGGCACAACAGCCG CTCCCGGTGCACCAGCCGCACCCCCTGGTCTCTGAGGGCTTCACAGTCAAAGCCATGATG AAAAACTCAGTCGTGAGAGGCCCACCAACTGCAGGAGCATTTAAAGAAAGACCAACCAAG CCTACAGCATTTCGAAAATTTTATGAACGAGGAGACTTCCCAATTGCCCTTGAACATGAT TCGAAAGGAAACAAAATAGCGTGGAAGGTAGAAATTGAAAAGCTGGATTACCATCATTAT CTGCCTCTGTTTTTTGACGGGCTCTGTGAAATGACATTTCCCTATGAATTTTTTGCTCGG CAAGGAATCCACGACATGCTGGAACACGGGGGGAACAAGATTCTTCCTGTCATTCCACAG CTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGCGTCACT CTCAAAGTCCTCCAGCATCTGGTTGTGTCGGCTGAGATGGTGGGTGAAGCTCTGGTGCCC TATTACCGTCAAATCCTCCCCATCCTGAACATCTTTAAGAATATGAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-317, gnl|bosTau2|chr9 (61190808-61191126) | |
| 1-317, gnl|canFam2|chr1 (54245760-54246319) | |
| 1-317, gnl|echTel1|scaffold_291011 (3397-3907) | |
| 1-317, gnl|hg17|chr6 (163119337-163119869) | |
| 1-317, gnl|Hg17|chr6 (163119518-163119839) | |
| 1-317, gnl|loxAfr1|scaffold_35168 (39974-39472) | |
| 1-317, gnl|mm7|chr17 (9558270-9557751) | |
| 1-317, gnl|Mm7|chr17 (9558097-9557779) | |
| 1-317, gnl|monDom2|scaffold_0 (40234684-40234120) | |
| 1-317, gnl|oryCun1|scaffold_212363 (243062-243570) | |
| 1-317, gnl|panTro1|chr5_random (16253413-16253945) | |
| 1-317, gnl|rheMac2|chr4 (159536082-159536613) | |
| 1-317, gnl|rn3|chr1 (44377580-44378100) | |
| 446-619, gnl|bosTau2|chr9 (62338412-62338239) | |
| 446-619, gnl|Hg17|chr6 (163453591-163453764) | |
| 446-619, gnl|Mm7|chr17 (9315306-9315133) | |
| 620-768, gnl|bosTau2|chr9 (62315292-62315144) | |
| 620-768, gnl|canFam2|chr1 (54561559-54561717) | |
| 620-768, gnl|danRer3|chr21 (28872491-28872333) | |
| 620-768, gnl|echTel1|scaffold_298021 (9934-9776) | |
| 620-768, gnl|fr1|chrUn (116461062-116460904) | |
| 620-768, gnl|galGal2|chr3 (40485696-40485538) | |
| 620-768, gnl|hg17|chr6 (163480698-163480856) | |
| 620-768, gnl|Hg17|chr6 (163480702-163480850) | |
| 620-768, gnl|mm7|chr17 (9294685-9294527) | |
| 620-768, gnl|Mm7|chr17 (9294679-9294531) | |
| 620-768, gnl|monDom2|scaffold_0 (39870134-39869976) | |
| 620-768, gnl|oryCun1|scaffold_186227 (147746-147588) | |
| 620-768, gnl|panTro1|chr5 (167773795-167773953) | |
| 620-768, gnl|rheMac2|chr4 (159888218-159888376) | |
| 620-768, gnl|rn3|chr1 (44627399-44627557) | |
| 620-768, gnl|tetNig1|chr10 (7225933-7225775) | |
| 620-768, gnl|xenTro1|scaffold_48 (167793-167951) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-317, gnl|bosTau2|chr9 (61190808-61191126) | |
| 1-317, gnl|canFam2|chr1 (54245760-54246319) | |
| 1-317, gnl|echTel1|scaffold_291011 (3397-3907) | |
| 1-317, gnl|hg17|chr6 (163119337-163119869) | |
| 1-317, gnl|Hg17|chr6 (163119518-163119839) | |
| 1-317, gnl|loxAfr1|scaffold_35168 (39974-39472) | |
| 1-317, gnl|mm7|chr17 (9558270-9557751) | |
| 1-317, gnl|Mm7|chr17 (9558097-9557779) | |
| 1-317, gnl|monDom2|scaffold_0 (40234684-40234120) | |
| 1-317, gnl|oryCun1|scaffold_212363 (243062-243570) | |
| 1-317, gnl|panTro1|chr5_random (16253413-16253945) | |
| 1-317, gnl|rheMac2|chr4 (159536082-159536613) | |
| 1-317, gnl|rn3|chr1 (44377580-44378100) | |
| 446-619, gnl|bosTau2|chr9 (62338412-62338239) | |
| 446-619, gnl|Hg17|chr6 (163453591-163453764) | |
| 446-619, gnl|Mm7|chr17 (9315306-9315133) | |
| 620-768, gnl|bosTau2|chr9 (62315292-62315144) | |
| 620-768, gnl|canFam2|chr1 (54561559-54561717) | |
| 620-768, gnl|danRer3|chr21 (28872491-28872333) | |
| 620-768, gnl|echTel1|scaffold_298021 (9934-9776) | |
| 620-768, gnl|fr1|chrUn (116461062-116460904) | |
| 620-768, gnl|galGal2|chr3 (40485696-40485538) | |
| 620-768, gnl|hg17|chr6 (163480698-163480856) | |
| 620-768, gnl|Hg17|chr6 (163480702-163480850) | |
| 620-768, gnl|mm7|chr17 (9294685-9294527) | |
| 620-768, gnl|Mm7|chr17 (9294679-9294531) | |
| 620-768, gnl|monDom2|scaffold_0 (39870134-39869976) | |
| 620-768, gnl|oryCun1|scaffold_186227 (147746-147588) | |
| 620-768, gnl|panTro1|chr5 (167773795-167773953) | |
| 620-768, gnl|rheMac2|chr4 (159888218-159888376) | |
| 620-768, gnl|rn3|chr1 (44627399-44627557) | |
| 620-768, gnl|tetNig1|chr10 (7225933-7225775) | |
| 620-768, gnl|xenTro1|scaffold_48 (167793-167951) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| nmm (0.132802) |