Ss1.1-rnms04_d19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGGCGCAGCGGGCGCTTTCGGCGCCGGGGGTGGCGCGGCAGGCGCGGTGCTGGGCAT CGACAACGTGTGCGAGCTGGCGGCGAGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCA CGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGTTGCGCCTTAGCTG GAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCTCCGCT GCTGGCCGCTGCTGGCCTGCACGCTGCACCCATGGCCGCTGAACGCGCTGTGGCCTTCAT GGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAGCTAGGCCGCCTCCAGGTCGACTC GGCCGAATACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTGATGCCTGTGGACTCTC AGACCCAGCGCATGTGGAGAGCCTGCAGGAGAAGGCGCAGGTGGCTCTCACCGAGTACGT GCGTGCTCAATACCCATCGCAACCCCAGCGCTTTGGGCGCCTGCTGCTGCGGCTCCCGGC TCTACGCGCCGTCCCCGCCTCCCTCATCTCCCAGCTGTTCTTCATGCGCCTCGTTGGCAA GACGCCCATAGAAACGCTGATCCGAGACATGCTGCTGTCGGGAAGTACCTTCAACTGGCC CTATGGCTCGGGCCAGTGACTGGACGGGGCTGGGTCTGCAGACCTTAAGGGGCGCGGATG CTCAGGCTTCCAGTGGGCGCCCCCACCCCAAGCCGGGGGGGGGGGGAAGGACCCCAGCTT CCCTCCTCAGACTCCTATTTTTTAAAGACTGTGAAATGTTTTGTCTTTTCTGTTTTCTAA ATGATCATGAAACCAAAAAGAGACTGATTGTCTAGGTTCCAGCCAAGTCTTCCCCAGAAC CCCTGGTCAAGACGAGGGGCGGGACTGAGGGTCCAGTCCCAGGACAGCCTTGTCTCTCAG TGCCCTAAGCATGGACTCGTGGTGGGGTCAGCTTCTCTGGTGTGATGGACAAAGTCCTGG CCTCTGGATTGGAGGGGCAGCTGCAGTGGGGCAGGGGTAGCGTGTCCCGGGTGAATCCTC TGGACACGTAATCCACGTTGGACACTACATGATGAATGAATCAAGGCCAATAATAAAGAA GTTTCCTACCTGTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGGCGCAGCGGGCGCTTTCGGCGCCGGGGGTGGCGCGGCAGGCGCGGTGCTGGGCAT CGACAACGTGTGCGAGCTGGCGGCGAGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCA CGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGTTGCGCCTTAGCTG GAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCTCCGCT GCTGGCCGCTGCTGGCCTGCACGCTGCACCCATGGCCGCTGAACGCGCTGTGGCCTTCAT GGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAGCTAGGCCGCCTCCAGGTCGACTC GGCCGAATACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTGATGCCTGTGGACTCTC AGACCCAGCGCATGTGGAGAGCCTGCAGGAGAAGGCGCAGGTGGCTCTCACCGAGTACGT GCGTGCTCAATACCCATCGCAACCCCAGCGCTTTGGGCGCCTGCTGCTGCGGCTCCCGGC TCTACGCGCCGTCCCCGCCTCCCTCATCTCCCAGCTGTTCTTCATGCGCCTCGTTGGCAA GACGCCCATAGAAACGCTGATCCGAGACATGCTGCTGTCGGGAAGTACCTTCAACTGGCC CTATGGCTCGGGCCAGTGACTGGACGGGGCTGGGTCTGCAGACCTTAAGGGGCGCGGATG CTCAGGCTTCCAGTGGGCGCCCCCACCCCAAGCCGGGGGGGGGGGGAAGGACCCCAGCTT CCCTCCTCAGACTCCTATTTTTTAAAGACTGTGAAATGTTTTGTCTTTTCTGTTTTCTAA ATGATCATGAAACCAAAAAGAGACTGATTGTCTAGGTTCCAGCCAAGTCTTCCCCAGAAC CCCTGGTCAAGACGAGGGGCGGGACTGAGGGTCCAGTCCCAGGACAGCCTTGTCTCTCAG TGCCCTAAGCATGGACTCGTGGTGGGGTCAGCTTCTCTGGTGTGATGGACAAAGTCCTGG CCTCTGGATTGGAGGGGCAGCTGCAGTGGGGCAGGGGTAGCGTGTCCCGGGTGAATCCTC TGGACACGTAATCCACGTTGGACACTACATGATGAATGAATCAAGGCCAATAATAAAGAA GTTTCCTACCTGTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 54-399, gnl|bosTau2|chr21 (5749223-5749568) | |
| 54-399, gnl|Hg17|chr15 (94678486-94678831) | |
| 54-399, gnl|Mm7|chr7 (66213841-66213496) | |
| 401-664, gnl|bosTau2|chr21 (5752292-5752555) | |
| 401-664, gnl|canFam2|chr3 (46998237-46997938) | |
| 401-664, gnl|danRer3|chr18 (27126471-27126185) | |
| 401-664, gnl|dasNov1|scaffold_23043 (17103-17393) | |
| 401-664, gnl|echTel1|scaffold_296364 (513-810) | |
| 401-664, gnl|fr1|chrUn (143493942-143493653) | |
| 401-664, gnl|galGal2|chr10 (16349515-16349805) | |
| 401-664, gnl|hg17|chr15 (94681559-94681858) | |
| 401-664, gnl|Hg17|chr15 (94681577-94681840) | |
| 401-664, gnl|loxAfr1|scaffold_35964 (14210-13913) | |
| 401-664, gnl|mm7|chr7 (66210682-66210384) | |
| 401-664, gnl|Mm7|chr7 (66210663-66210400) | |
| 401-664, gnl|monDom2|scaffold_12 (65392320-65392030) | |
| 401-664, gnl|oryCun1|scaffold_122450 (3409-3708) | |
| 401-664, gnl|panTro1|chr16 (95701120-95701419) | |
| 401-664, gnl|rheMac2|chr7 (76238936-76239233) | |
| 401-664, gnl|rn3|chr1 (125359748-125359458) | |
| 401-664, gnl|tetNig1|chr13 (2747286-2747592) | |
| 401-664, gnl|xenTro1|scaffold_308 (320875-321174) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-399, gnl|bosTau2|chr21 (5749223-5749568) | |
| 54-399, gnl|Hg17|chr15 (94678486-94678831) | |
| 54-399, gnl|Mm7|chr7 (66213841-66213496) | |
| 401-664, gnl|bosTau2|chr21 (5752292-5752555) | |
| 401-664, gnl|canFam2|chr3 (46998237-46997938) | |
| 401-664, gnl|danRer3|chr18 (27126471-27126185) | |
| 401-664, gnl|dasNov1|scaffold_23043 (17103-17393) | |
| 401-664, gnl|echTel1|scaffold_296364 (513-810) | |
| 401-664, gnl|fr1|chrUn (143493942-143493653) | |
| 401-664, gnl|galGal2|chr10 (16349515-16349805) | |
| 401-664, gnl|hg17|chr15 (94681559-94681858) | |
| 401-664, gnl|Hg17|chr15 (94681577-94681840) | |
| 401-664, gnl|loxAfr1|scaffold_35964 (14210-13913) | |
| 401-664, gnl|mm7|chr7 (66210682-66210384) | |
| 401-664, gnl|Mm7|chr7 (66210663-66210400) | |
| 401-664, gnl|monDom2|scaffold_12 (65392320-65392030) | |
| 401-664, gnl|oryCun1|scaffold_122450 (3409-3708) | |
| 401-664, gnl|panTro1|chr16 (95701120-95701419) | |
| 401-664, gnl|rheMac2|chr7 (76238936-76239233) | |
| 401-664, gnl|rn3|chr1 (125359748-125359458) | |
| 401-664, gnl|tetNig1|chr13 (2747286-2747592) | |
| 401-664, gnl|xenTro1|scaffold_308 (320875-321174) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cly (0.120642) | |
| jej (0.0989218) |