Non-Coding RNA Search

Ss1.1-rnms09_j7.5

Sequence:


               
               CTCGGTGGCCCCGGGAGGGATCAGGAGCTTTGGGGAGGACCTCGGGTTGGGGACGGCGCA
TGAATCCCGTCCTGTGGAGGGCGAGGTGACCTCGGTTTGGAGAGCGCAGGTGCGATCATG
GGTCGCGAGTTTGGGCATCTGACGCGGATGCGCCATGTGATCACCTACAGCTTGTCGCCC
TTCGAGCAGCGCGCCTTCCCGCACTACTTCACTAAGGGCATCCCCAATGTGCTGCGCCGC
ACTCGGGCGTGCATCCTTCGTGTTGCGCCGCCATTTGTAGTGTTTTATCTTGTCTACACA
TGGGGAACCCAGGAGTTTGAGAAATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGAC
AAATGACCAACTCATCAGGATGATGGTTCCTTGTCTCTGAAAGACCCATCTCTGGGAGAA
GAGTCCACATTGTAGTGTCTTGAAGACACAATAAACTTTCTATGGGCTGCACTGTTACGA
TTTTGCGTTTTTGTGAGCATAATCCTTGGATGTGACTGGTAATTTTCAAGTTCATGAATT
CCTCTCCCAGCATGAGTCCTGAACCATTTTGGCTAGTGTAAGTTTGGTGAAGGATTGTGG
CTCACCTTTTGTTCTGTAATCCACAAGAATGTAGCTGCAGCTACTCCTGTACTTGACCTG
TTGTGAATAACACGGACTACAGCGAATGTTGGCTTTCTGCCCTCTGCTCCCATGACAATA
AAATCTCCTAACTGTATTGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGTGGCCCCGGGAGGGATCAGGAGCTTTGGGGAGGACCTCGGGTTGGGGACGGCGCA
TGAATCCCGTCCTGTGGAGGGCGAGGTGACCTCGGTTTGGAGAGCGCAGGTGCGATCATG
GGTCGCGAGTTTGGGCATCTGACGCGGATGCGCCATGTGATCACCTACAGCTTGTCGCCC
TTCGAGCAGCGCGCCTTCCCGCACTACTTCACTAAGGGCATCCCCAATGTGCTGCGCCGC
ACTCGGGCGTGCATCCTTCGTGTTGCGCCGCCATTTGTAGTGTTTTATCTTGTCTACACA
TGGGGAACCCAGGAGTTTGAGAAATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGAC
AAATGACCAACTCATCAGGATGATGGTTCCTTGTCTCTGAAAGACCCATCTCTGGGAGAA
GAGTCCACATTGTAGTGTCTTGAAGACACAATAAACTTTCTATGGGCTGCACTGTTACGA
TTTTGCGTTTTTGTGAGCATAATCCTTGGATGTGACTGGTAATTTTCAAGTTCATGAATT
CCTCTCCCAGCATGAGTCCTGAACCATTTTGGCTAGTGTAAGTTTGGTGAAGGATTGTGG
CTCACCTTTTGTTCTGTAATCCACAAGAATGTAGCTGCAGCTACTCCTGTACTTGACCTG
TTGTGAATAACACGGACTACAGCGAATGTTGGCTTTCTGCCCTCTGCTCCCATGACAATA
AAATCTCCTAACTGTATTGTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1351362|sp|P13271|UCRQ_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1351362|sp|P13271|UCRQ_BOVIN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               125-455, gnl|bosTau2|chr10 (57446521-57446219)
               

               
               125-455, gnl|Hg17|chr4 (136223042-136223372)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-455, gnl|bosTau2|chr10 (57446521-57446219)
               

               
               125-455, gnl|Hg17|chr4 (136223042-136223372)

Expressed library(ies): 49 entry(ies)

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Expressed library(ies): 49 entry(ies)

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               hea (2.24949)
               

               
               hlv (1.81033)
               

               
               nms (1.49701)
               

               
               ste (1.21687)
               

               
               ssp (1.08416)
               

               
               mas (1.05152)
               

               
               duo (1.03681)
               

               
               ldo (0.679018)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               ece (0.45861)
               

               
               cli (0.458435)
               

               
               isp (0.451128)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (2.24949)
               

               
               hlv (1.81033)
               

               
               nms (1.49701)
               

               
               ste (1.21687)
               

               
               ssp (1.08416)
               

               
               mas (1.05152)
               

               
               duo (1.03681)
               

               
               ldo (0.679018)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               ece (0.45861)
               

               
               cli (0.458435)
               

               
               isp (0.451128)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)

	125-455, gnl\|bosTau2\|chr10 (57446521-57446219)
	125-455, gnl\|Hg17\|chr4 (136223042-136223372)

	hea (2.24949)
	hlv (1.81033)
	nms (1.49701)
	ste (1.21687)
	ssp (1.08416)
	mas (1.05152)
	duo (1.03681)
	ldo (0.679018)
	fhi (0.678311)
	nje (0.66368)
	col (0.585023)
	pty (0.570858)
	sin (0.524843)
	pro (0.512033)
	jej (0.494609)
	eje (0.494169)
	ece (0.45861)
	cli (0.458435)
	isp (0.451128)
	pla (0.401016)
	nmm (0.398406)
	pgl (0.35545)
	fty (0.351679)
	ton (0.351)
	med (0.348756)
	cki (0.330469)
	cje (0.330469)
	sme (0.305437)
	cag (0.302389)
	nbm (0.297974)
	fat (0.294855)
	nca (0.273748)
	ute (0.265569)
	ese (0.253004)
	cly (0.241284)
	ecc (0.23007)
	fli (0.202881)
	fcc (0.197785)
	nep (0.183925)
	fbs (0.175346)
	rec (0.17307)
	csp (0.161186)
	hyp (0.142837)
	che (0.136314)
	lyg (0.133103)
	kid (0.129735)
	eep (0.122564)
	eru (0.120048)
	cbl (0.114797)