Non-Coding RNA Search

Ss1.1-rnms15_j13.5

Sequence:


               
               AGAGGAGAATGTAAATTTGTCAGTTTATTTCTGACTAGGGATATTTTTTTTTTTCCATTT
AGAAAAGAAAAAAAAAAAAAAAAAAAAAACACCTTACTATCGTACAGAGCGGTACTAGCA
TCGTGCTATATAAAATCATTTGCACATTCCTGAGTAGAGGTATACTGATTATAAGACCCA
AAGGTAATTTCATAGCAAAATACATAAAATCAGTTGGAGCTTTTATACAAACATGGAAAC
CAACTTTGTAGAACTTTTGCCATTTGACTTAGGATTGGAATATGAGCTTTTATACAATTC
ATATTCTTATTTGGCAAATGCACAGTTTAGTATTACCTCTCTGATGGCCTTTATTAGAAA
GGCGGTTTTAGAAGCTATTGTGATCCACTAAGGAAATGTTTTAACAGCTAGCGACCACTG
CTTGCCTGAAAGGGCGATCTTAAATTTGGTGCAGAAAAAAACAAAAACAAAAACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAGAATGTAAATTTGTCAGTTTATTTCTGACTAGGGATATTTTTTTTTTTCCATTT
AGAAAAGAAAAAAAAAAAAAAAAAAAAAACACCTTACTATCGTACAGAGCGGTACTAGCA
TCGTGCTATATAAAATCATTTGCACATTCCTGAGTAGAGGTATACTGATTATAAGACCCA
AAGGTAATTTCATAGCAAAATACATAAAATCAGTTGGAGCTTTTATACAAACATGGAAAC
CAACTTTGTAGAACTTTTGCCATTTGACTTAGGATTGGAATATGAGCTTTTATACAATTC
ATATTCTTATTTGGCAAATGCACAGTTTAGTATTACCTCTCTGATGGCCTTTATTAGAAA
GGCGGTTTTAGAAGCTATTGTGATCCACTAAGGAAATGTTTTAACAGCTAGCGACCACTG
CTTGCCTGAAAGGGCGATCTTAAATTTGGTGCAGAAAAAAACAAAAACAAAAACAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.773376
               

               
               320-438, - strand, RNAz p=0.545844

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.773376
               

               
               320-438, - strand, RNAz p=0.545844

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-476, gnl|bosTau2|chr16 (15110139-15110604)
               

               
               1-476, gnl|Hg17|chr9 (77563665-77563207)
               

               
               1-476, gnl|Mm7|chr19 (16086465-16086928)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-476, gnl|bosTau2|chr16 (15110139-15110604)
               

               
               1-476, gnl|Hg17|chr9 (77563665-77563207)
               

               
               1-476, gnl|Mm7|chr19 (16086465-16086928)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.427716)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ecc (0.115035)

	1-119, - strand, RNAz p=0.773376
	320-438, - strand, RNAz p=0.545844

	1-476, gnl\|bosTau2\|chr16 (15110139-15110604)
	1-476, gnl\|Hg17\|chr9 (77563665-77563207)
	1-476, gnl\|Mm7\|chr19 (16086465-16086928)

	nms (0.427716)
	fce (0.271592)
	ese (0.253004)
	rec (0.17307)
	fco (0.157208)
	ecc (0.115035)