Non-Coding RNA Search

Ss1.1-rnms15_k9.5

Sequence:


               
               GCTATGACACAGGAGACAAGTCTATCCAGTGTAGCAGGAGACCAGATGCATTCAAGTTCT
GGATGACCTGGAAGGCCCTGGGCACATTAGGCCTTGAAGAGAGAGTTAATCGTGCTCTTG
CTTTATCTAGGTACTTAGTAGAAGAAATCAAGAAAAGAGAAGGATTCAAGTTACTGCTGG
AACCTGAATATGCCAATATTTGCTTTTGGTACATTCCACCGAGCCTCAGAGAGATGGAGG
AAGGACCTGAGTTCTGGGCAAAACTTCATTTGGTGGCCCCGGCCATTAAGGAGCGGATGA
TGAAGAAGGGGAGCCTCATGTTGGGGTACCAGCCCCACCGGGGGAAGGTCAACTTCTTCC
GGCAGGTGGTGATCAGCCCTCAAGTCAGCCGGGAGGACATGGACTTCCTCCTGGACGAGA
TAGACCTTCTGGGTAGGGACATGTAGCTGTGGCTTTTGGTCCCCCAGAGGCCTGGGCCCT
TCCCTGGAGGGTTGCAGATCCAGGACATCTGGGGACACTTAGGAGATCGCAGCTGTTCTG
ATGAGAAATAGGAAATGTACTCCATCCTTGCCCAGCAAAACCAAAATGCTAAGTGAATAG
ATTTAAGGACTGTTTAGCTGCCTGGGTGCCTCTGTTGCGATAAAGGAGGTAATGACAGAT
GGCTTTTCTCAAAGATCATCCGTGGGAGAGAGCCTTGAAGGGAGTTTAATAAGTACCATG
TGGGCTTTGGGTTCGAAGCTTTCATTGTTCTTTAAAGGAGGTATAAATTAGTAGGTTAAA
GCAGTGGTTTCAATGCATGGTCCTTAGACCAGCAGCACCAGCAGCACCTAGAAACTTGTC
AGAAATGCAGGTTCTCAGCCTAGCCCCAGACCCACTGAATCAGAAACTCTAGGGGTGGGC
CAAGTATTCTGTATTTTAAGGAGATTTCCAGGTGATTCTAAGGCAAGGTAAAAACTGAGA
ACCAGTGGTTTAGCTTAACTTTGAATTGACTGAATGATCACTCTGATGTTTTGCCAGCAA
AGGGATTTCTAATATTGCAGTGGCCCCTGCATCAGTCTTTGAAAATACAGCTGTAGCATC
TATAGCACAAATGCTTAGGGGCATCAAAAGTATATTGAAGCTATTTTTAAAAGAGAAACT
ATATAAGCTGTTTACTTTATAAAAAGGTATCTTTTATGCAGGCTAAATGTTTATTCTCAA
AAGTTAAAGTTAGCCATTATCTATTCTAAATTATTTAAATTAGAGGTAAGGATAAAAGAC
AACGACTTTGTGATGTAGCTCTCTTTAATCCAAGCAATAGTCCTAATTCACTTCCCCAAA
TCATTTGTGTCATTAATTGGGAACAGACATTAGGTATATATGTCTCTAATTAGGTACCTC
TCTTAGCTTGAGGGGCCCTTTTCTTATCTTCTCTGCTTATAGGAAATAACCAGAATGAAG
TCCAGGGTTATACAACATTCCCTTTCTCAAGCTTTGAAATGTCAGTGTAGACAATTAAGT
GGTTTATATTGGACAGAGTATCTGGGAATTAGAGGTCTTTCAGGGAAAACACCTCCTCCA
TTTCTCCTGGGGATGAATGATTGTAATTCTACCACTGATCCTGGTCCTAGATTTCTAGCA
GAATCTTATTTGATTAAAAAAATAAGCAGAATTCAGAGATGTGGGTGCAGAGGTCAACAA
GGTACGATTACAACTCTAATTAGAGTTCTGATTTGGAAGGCCCATGATTGAAGAGTGTTC
AAGTACTAGACTTAGCATATTCAACTACCATTTTGTACTCTTTCATTAACTTGCATCATT
TAAATTTTTTAGAGTAAAAAGCAATTGTATACTATTTGCTTTTATTCCATATTTTCATTT
TAGGGTGTGTGATTTCTCAATATCTCTTCGGTCAAAGACTATTTTAATTTTTCTCTGAAT
GACTTCAATCTCTGGCAATATTTGTGTGTGTGTTTATATTGCATTTCTTGTTGCCTTTTT
GTTTTAATGTCTTCATAAAATGTTCTGAAATTGATGTTTGCAATAATTTGAGTTTCATGA
AATAAAAAGCAACATGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTATGACACAGGAGACAAGTCTATCCAGTGTAGCAGGAGACCAGATGCATTCAAGTTCT
GGATGACCTGGAAGGCCCTGGGCACATTAGGCCTTGAAGAGAGAGTTAATCGTGCTCTTG
CTTTATCTAGGTACTTAGTAGAAGAAATCAAGAAAAGAGAAGGATTCAAGTTACTGCTGG
AACCTGAATATGCCAATATTTGCTTTTGGTACATTCCACCGAGCCTCAGAGAGATGGAGG
AAGGACCTGAGTTCTGGGCAAAACTTCATTTGGTGGCCCCGGCCATTAAGGAGCGGATGA
TGAAGAAGGGGAGCCTCATGTTGGGGTACCAGCCCCACCGGGGGAAGGTCAACTTCTTCC
GGCAGGTGGTGATCAGCCCTCAAGTCAGCCGGGAGGACATGGACTTCCTCCTGGACGAGA
TAGACCTTCTGGGTAGGGACATGTAGCTGTGGCTTTTGGTCCCCCAGAGGCCTGGGCCCT
TCCCTGGAGGGTTGCAGATCCAGGACATCTGGGGACACTTAGGAGATCGCAGCTGTTCTG
ATGAGAAATAGGAAATGTACTCCATCCTTGCCCAGCAAAACCAAAATGCTAAGTGAATAG
ATTTAAGGACTGTTTAGCTGCCTGGGTGCCTCTGTTGCGATAAAGGAGGTAATGACAGAT
GGCTTTTCTCAAAGATCATCCGTGGGAGAGAGCCTTGAAGGGAGTTTAATAAGTACCATG
TGGGCTTTGGGTTCGAAGCTTTCATTGTTCTTTAAAGGAGGTATAAATTAGTAGGTTAAA
GCAGTGGTTTCAATGCATGGTCCTTAGACCAGCAGCACCAGCAGCACCTAGAAACTTGTC
AGAAATGCAGGTTCTCAGCCTAGCCCCAGACCCACTGAATCAGAAACTCTAGGGGTGGGC
CAAGTATTCTGTATTTTAAGGAGATTTCCAGGTGATTCTAAGGCAAGGTAAAAACTGAGA
ACCAGTGGTTTAGCTTAACTTTGAATTGACTGAATGATCACTCTGATGTTTTGCCAGCAA
AGGGATTTCTAATATTGCAGTGGCCCCTGCATCAGTCTTTGAAAATACAGCTGTAGCATC
TATAGCACAAATGCTTAGGGGCATCAAAAGTATATTGAAGCTATTTTTAAAAGAGAAACT
ATATAAGCTGTTTACTTTATAAAAAGGTATCTTTTATGCAGGCTAAATGTTTATTCTCAA
AAGTTAAAGTTAGCCATTATCTATTCTAAATTATTTAAATTAGAGGTAAGGATAAAAGAC
AACGACTTTGTGATGTAGCTCTCTTTAATCCAAGCAATAGTCCTAATTCACTTCCCCAAA
TCATTTGTGTCATTAATTGGGAACAGACATTAGGTATATATGTCTCTAATTAGGTACCTC
TCTTAGCTTGAGGGGCCCTTTTCTTATCTTCTCTGCTTATAGGAAATAACCAGAATGAAG
TCCAGGGTTATACAACATTCCCTTTCTCAAGCTTTGAAATGTCAGTGTAGACAATTAAGT
GGTTTATATTGGACAGAGTATCTGGGAATTAGAGGTCTTTCAGGGAAAACACCTCCTCCA
TTTCTCCTGGGGATGAATGATTGTAATTCTACCACTGATCCTGGTCCTAGATTTCTAGCA
GAATCTTATTTGATTAAAAAAATAAGCAGAATTCAGAGATGTGGGTGCAGAGGTCAACAA
GGTACGATTACAACTCTAATTAGAGTTCTGATTTGGAAGGCCCATGATTGAAGAGTGTTC
AAGTACTAGACTTAGCATATTCAACTACCATTTTGTACTCTTTCATTAACTTGCATCATT
TAAATTTTTTAGAGTAAAAAGCAATTGTATACTATTTGCTTTTATTCCATATTTTCATTT
TAGGGTGTGTGATTTCTCAATATCTCTTCGGTCAAAGACTATTTTAATTTTTCTCTGAAT
GACTTCAATCTCTGGCAATATTTGTGTGTGTGTTTATATTGCATTTCTTGTTGCCTTTTT
GTTTTAATGTCTTCATAAAATGTTCTGAAATTGATGTTTGCAATAATTTGAGTTTCATGA
AATAAAAAGCAACATGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12834902|dbj|BAB23083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834902|dbj|BAB23083.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               311-547, + strand, RNAz p=0.927528
               

               
               1377-1475, - strand, RNAz p=0.703002

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-547, + strand, RNAz p=0.927528
               

               
               1377-1475, - strand, RNAz p=0.703002

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_207359, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_207359, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-136, gnl|bosTau2|chr22 (3155833-3155968)
               

               
               1-136, gnl|Hg17|chr3 (30817514-30817379)
               

               
               1-136, gnl|Mm7|chr9 (115678896-115679031)
               


               
               272-1751, gnl|bosTau2|chr22 (3262073-3263517)
               

               
               272-1751, gnl|Hg17|chr3 (30744912-30743204)
               

               
               272-1751, gnl|Mm7|chr9 (115746266-115748154)
               


               
               777-973, gnl|bosTau2|chr10 (6694386-6694579)
               

               
               777-973, gnl|canFam2|chr30 (34052440-34052656)
               

               
               777-973, gnl|dasNov1|scaffold_93562 (393-588)
               

               
               777-973, gnl|hg17|chr15 (64916904-64917145)
               

               
               777-973, gnl|Hg17|chr15 (64917180-64916984)
               

               
               777-973, gnl|oryCun1|scaffold_113054 (314-131)
               

               
               777-973, gnl|panTro1|chr16 (65425272-65425514)
               

               
               777-973, gnl|rheMac2|chr7 (45384699-45384940)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr22 (3155833-3155968)
               

               
               1-136, gnl|Hg17|chr3 (30817514-30817379)
               

               
               1-136, gnl|Mm7|chr9 (115678896-115679031)
               


               
               272-1751, gnl|bosTau2|chr22 (3262073-3263517)
               

               
               272-1751, gnl|Hg17|chr3 (30744912-30743204)
               

               
               272-1751, gnl|Mm7|chr9 (115746266-115748154)
               


               
               777-973, gnl|bosTau2|chr10 (6694386-6694579)
               

               
               777-973, gnl|canFam2|chr30 (34052440-34052656)
               

               
               777-973, gnl|dasNov1|scaffold_93562 (393-588)
               

               
               777-973, gnl|hg17|chr15 (64916904-64917145)
               

               
               777-973, gnl|Hg17|chr15 (64917180-64916984)
               

               
               777-973, gnl|oryCun1|scaffold_113054 (314-131)
               

               
               777-973, gnl|panTro1|chr16 (65425272-65425514)
               

               
               777-973, gnl|rheMac2|chr7 (45384699-45384940)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (1.64843)
               

               
               tbr (1.07925)
               

               
               ldo (0.873024)
               

               
               ste (0.811249)
               

               
               nms (0.427716)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.64843)
               

               
               tbr (1.07925)
               

               
               ldo (0.873024)
               

               
               ste (0.811249)
               

               
               nms (0.427716)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

	311-547, + strand, RNAz p=0.927528
	1377-1475, - strand, RNAz p=0.703002

	1-136, gnl\|bosTau2\|chr22 (3155833-3155968)
	1-136, gnl\|Hg17\|chr3 (30817514-30817379)
	1-136, gnl\|Mm7\|chr9 (115678896-115679031)

	272-1751, gnl\|bosTau2\|chr22 (3262073-3263517)
	272-1751, gnl\|Hg17\|chr3 (30744912-30743204)
	272-1751, gnl\|Mm7\|chr9 (115746266-115748154)

	777-973, gnl\|bosTau2\|chr10 (6694386-6694579)
	777-973, gnl\|canFam2\|chr30 (34052440-34052656)
	777-973, gnl\|dasNov1\|scaffold_93562 (393-588)
	777-973, gnl\|hg17\|chr15 (64916904-64917145)
	777-973, gnl\|Hg17\|chr15 (64917180-64916984)
	777-973, gnl\|oryCun1\|scaffold_113054 (314-131)
	777-973, gnl\|panTro1\|chr16 (65425272-65425514)
	777-973, gnl\|rheMac2\|chr7 (45384699-45384940)

	bfe (1.64843)
	tbr (1.07925)
	ldo (0.873024)
	ste (0.811249)
	nms (0.427716)
	vin (0.332557)
	sme (0.305437)
	nep (0.183925)
	ton (0.1755)
	ssp (0.13552)