Non-Coding RNA Search

Ss1.1-rnms18_i23.5

Sequence:


               
               AAAAAGCCATGAATACTTATTATTCTATATGTAAATTAAAAGTTGAGCCAAACTCTTTGT
GGTATATAGCATCTTAAATATATTATCACCTTTGATGTAAGTACCTATGTATTGTATGGT
CACCAGATTAAAAAGTATATTTTTGTGGATTGCCGCCAATTTGGGGGGAAAAGGCGAGAT
CCTTATTAAGTAGAGTATTCACTGTTTAATATTTACTATTTTGTTAAATATACTGTACTT
TGGATTTTAATTATTAGCCCAGTCTTTTCAGAAGATTGTATAAAGGGGTTTCTCCCCTCA
CTGGTGGTGAATGTGTGATGTTACATTGTAATCTTTGTGCTGTATGGGTTGAGCATCATT
ATATATTTTATATGTGTATATAAATAGCAAAGTGGCAAAAAAAATTGGTGTTAAGTTCAT
CCTGCATAAATGTAAAATGTGTTGTTAACAGAGTTTATAAGGCATTATTTAAAACTTGCC
TTTTGTGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCCATGAATACTTATTATTCTATATGTAAATTAAAAGTTGAGCCAAACTCTTTGT
GGTATATAGCATCTTAAATATATTATCACCTTTGATGTAAGTACCTATGTATTGTATGGT
CACCAGATTAAAAAGTATATTTTTGTGGATTGCCGCCAATTTGGGGGGAAAAGGCGAGAT
CCTTATTAAGTAGAGTATTCACTGTTTAATATTTACTATTTTGTTAAATATACTGTACTT
TGGATTTTAATTATTAGCCCAGTCTTTTCAGAAGATTGTATAAAGGGGTTTCTCCCCTCA
CTGGTGGTGAATGTGTGATGTTACATTGTAATCTTTGTGCTGTATGGGTTGAGCATCATT
ATATATTTTATATGTGTATATAAATAGCAAAGTGGCAAAAAAAATTGGTGTTAAGTTCAT
CCTGCATAAATGTAAAATGTGTTGTTAACAGAGTTTATAAGGCATTATTTAAAACTTGCC
TTTTGTGAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-438, + strand, RNAz p=0.860278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-438, + strand, RNAz p=0.860278

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               160-272, + strand, RNAmicro p=0.996107

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               160-272, + strand, RNAmicro p=0.996107

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC053871, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC053871, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr21 (4704969-4705459)
               

               
               1-492, gnl|Hg17|chr15 (98071520-98072002)
               

               
               1-492, gnl|Mm7|chr7 (63095245-63094768)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr21 (4704969-4705459)
               

               
               1-492, gnl|Hg17|chr15 (98071520-98072002)
               

               
               1-492, gnl|Mm7|chr7 (63095245-63094768)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nmm (0.132802)

	1-492, gnl\|bosTau2\|chr21 (4704969-4705459)
	1-492, gnl\|Hg17\|chr15 (98071520-98072002)
	1-492, gnl\|Mm7\|chr7 (63095245-63094768)