Ss1.1-rnms19_n5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTATTTCGTCCAGAAAGCCGACAAGAAAACCATGGAATGGTTCAATGTCTATGAACACAA CCGGCACACCTCCTGCACCGTCTCCGACCTCATCATGGGCAACGAATACTATTTCCGAGT TTACAGCGAGAACATCTGCGGCCTCAGTGACTCACCCGGCGTCTCCAAGAACACGGCCCG GATCCTCAAGACAGGCATCACCTTCAAGTTACCGGAGTTCAAGGAGCATGACTTCCGAAC GCCTCCCAAGTTCCTGACGCCGCTGCCCGACCGAGTGGTCGTGGCTGGTTACACTGCAGC TCTCAACTGCGCCGTCAGAGGCCACCCAAAGCCCAAGGTGGTCTGGATGAAGAACCAGAT GGAGATTGGCGAGGACCCCAAGTTCCTGATGACCAACCACCAGGGCGTCCTGACGCTGAA CATCCGCCGCCCGTCCCCGTTCGACTCGGGGACTTACTCGTGTCGGGCCGTCAACGAGCT GGGGGAGGCCCTGGCCGAGTGCAAGCTGGAAGTCCGAGTGCCGCAGTGAGGCTCCCGCCT CCACCCAAGGTAGTTGGCTGCTGAGTCCTGACCCGGATCTCCCCGAACCCCTTTCCCTTT CCCGAGTTATTACAAGATTCTTGAGTCGGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTATTTCGTCCAGAAAGCCGACAAGAAAACCATGGAATGGTTCAATGTCTATGAACACAA CCGGCACACCTCCTGCACCGTCTCCGACCTCATCATGGGCAACGAATACTATTTCCGAGT TTACAGCGAGAACATCTGCGGCCTCAGTGACTCACCCGGCGTCTCCAAGAACACGGCCCG GATCCTCAAGACAGGCATCACCTTCAAGTTACCGGAGTTCAAGGAGCATGACTTCCGAAC GCCTCCCAAGTTCCTGACGCCGCTGCCCGACCGAGTGGTCGTGGCTGGTTACACTGCAGC TCTCAACTGCGCCGTCAGAGGCCACCCAAAGCCCAAGGTGGTCTGGATGAAGAACCAGAT GGAGATTGGCGAGGACCCCAAGTTCCTGATGACCAACCACCAGGGCGTCCTGACGCTGAA CATCCGCCGCCCGTCCCCGTTCGACTCGGGGACTTACTCGTGTCGGGCCGTCAACGAGCT GGGGGAGGCCCTGGCCGAGTGCAAGCTGGAAGTCCGAGTGCCGCAGTGAGGCTCCCGCCT CCACCCAAGGTAGTTGGCTGCTGAGTCCTGACCCGGATCTCCCCGAACCCCTTTCCCTTT CCCGAGTTATTACAAGATTCTTGAGTCGGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 36-195, gnl|bosTau2|chr16 (2335881-2335722) | |
| 36-195, gnl|canFam2|chr7 (3041703-3041584) | |
| 36-195, gnl|danRer3|chr3 (25045183-25045302) | |
| 36-195, gnl|dasNov1|scaffold_22856 (6158-6039) | |
| 36-195, gnl|echTel1|scaffold_279622 (38694-38813) | |
| 36-195, gnl|fr1|chrUn (245699279-245699398) | |
| 36-195, gnl|galGal2|chr32 (115141-115022) | |
| 36-195, gnl|hg17|chr1 (199871072-199871191) | |
| 36-195, gnl|Hg17|chr1 (199871234-199871075) | |
| 36-195, gnl|loxAfr1|scaffold_113553 (5009-5126) | |
| 36-195, gnl|mm7|chr1 (134088351-134088232) | |
| 36-195, gnl|Mm7|chr1 (134088187-134088346) | |
| 36-195, gnl|monDom2|scaffold_13 (3201007-3201126) | |
| 36-195, gnl|oryCun1|scaffold_206851 (91793-91674) | |
| 36-195, gnl|panTro1|chr1 (182725562-182725681) | |
| 36-195, gnl|rheMac2|chr1 (167264504-167264385) | |
| 36-195, gnl|rn3|chr13 (47170161-47170042) | |
| 36-195, gnl|tetNig1|chr5 (7407774-7407656) | |
| 36-195, gnl|xenTro1|scaffold_250 (169448-169567) | |
| 322-518, gnl|bosTau2|chr18 (49283247-49283444) | |
| 322-518, gnl|Hg17|chr19 (55659404-55659601) | |
| 322-518, gnl|Mm7|chr7 (40678102-40677905) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-195, gnl|bosTau2|chr16 (2335881-2335722) | |
| 36-195, gnl|canFam2|chr7 (3041703-3041584) | |
| 36-195, gnl|danRer3|chr3 (25045183-25045302) | |
| 36-195, gnl|dasNov1|scaffold_22856 (6158-6039) | |
| 36-195, gnl|echTel1|scaffold_279622 (38694-38813) | |
| 36-195, gnl|fr1|chrUn (245699279-245699398) | |
| 36-195, gnl|galGal2|chr32 (115141-115022) | |
| 36-195, gnl|hg17|chr1 (199871072-199871191) | |
| 36-195, gnl|Hg17|chr1 (199871234-199871075) | |
| 36-195, gnl|loxAfr1|scaffold_113553 (5009-5126) | |
| 36-195, gnl|mm7|chr1 (134088351-134088232) | |
| 36-195, gnl|Mm7|chr1 (134088187-134088346) | |
| 36-195, gnl|monDom2|scaffold_13 (3201007-3201126) | |
| 36-195, gnl|oryCun1|scaffold_206851 (91793-91674) | |
| 36-195, gnl|panTro1|chr1 (182725562-182725681) | |
| 36-195, gnl|rheMac2|chr1 (167264504-167264385) | |
| 36-195, gnl|rn3|chr13 (47170161-47170042) | |
| 36-195, gnl|tetNig1|chr5 (7407774-7407656) | |
| 36-195, gnl|xenTro1|scaffold_250 (169448-169567) | |
| 322-518, gnl|bosTau2|chr18 (49283247-49283444) | |
| 322-518, gnl|Hg17|chr19 (55659404-55659601) | |
| 322-518, gnl|Mm7|chr7 (40678102-40677905) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nms (1.49701) | |
| mas (0.42061) | |
| hyp (0.142837) | |
| nca (0.136874) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (1.49701) | |
| mas (0.42061) | |
| hyp (0.142837) | |
| nca (0.136874) |