Non-Coding RNA Search

Ss1.1-rnms21_f14.5

Sequence:


               
               TATATCGCCATATACACATATATAGACGGGGTTCTCCCGGCATACTATGCGCGCGCGCGC
GCACACACACACACGCAGAAGGGCCTGGAACCTCCCACTCCCGGGGATGGACACAGGCCC
AACCCCAGCCCCACCCATCACATGTGTTTGCGTGTAGACACCTCGCCACAGCCTGTGCCC
CACCTGTCCTGCTTCCTGCTCCCTATCAGTGCCACGAGGGCAGAGGTGCTTCCTGGCCAC
CTGCCCACATTCCGTCCCGCTGCCTCACTGCAGCCACCATGGCCCCAGGACAGCAGTGGG
GCCAGAGGTGGCCCTCAAGCTATGGCCTCCTCCTGCCCTGGGGCCCGGCCTCCCTCTGGC
CTGTCACTGACATTCACAGGGGATTAGGGTGGAATCACCAAAACCAGTGCCAGGACAGAG
GTGGGGACGCTGTGTGAACTTTTTAAAATAAAAACAAAACAACACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATCGCCATATACACATATATAGACGGGGTTCTCCCGGCATACTATGCGCGCGCGCGC
GCACACACACACACGCAGAAGGGCCTGGAACCTCCCACTCCCGGGGATGGACACAGGCCC
AACCCCAGCCCCACCCATCACATGTGTTTGCGTGTAGACACCTCGCCACAGCCTGTGCCC
CACCTGTCCTGCTTCCTGCTCCCTATCAGTGCCACGAGGGCAGAGGTGCTTCCTGGCCAC
CTGCCCACATTCCGTCCCGCTGCCTCACTGCAGCCACCATGGCCCCAGGACAGCAGTGGG
GCCAGAGGTGGCCCTCAAGCTATGGCCTCCTCCTGCCCTGGGGCCCGGCCTCCCTCTGGC
CTGTCACTGACATTCACAGGGGATTAGGGTGGAATCACCAAAACCAGTGCCAGGACAGAG
GTGGGGACGCTGTGTGAACTTTTTAAAATAAAAACAAAACAACACCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               270-373, - strand, RNAz p=0.999968

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-373, - strand, RNAz p=0.999968

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               302-381, + strand, RNAmicro p=0.999997

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               302-381, + strand, RNAmicro p=0.999997

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               172-461, gnl|bosTau2|chr9 (61723380-61723667)
               

               
               172-461, gnl|Hg17|chr22 (39131119-39130799)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-461, gnl|bosTau2|chr9 (61723380-61723667)
               

               
               172-461, gnl|Hg17|chr22 (39131119-39130799)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

	172-461, gnl\|bosTau2\|chr9 (61723380-61723667)
	172-461, gnl\|Hg17\|chr22 (39131119-39130799)