Non-Coding RNA Search

Ss1.1-rnms21_h22.5

Sequence:


               
               GCAGGTGGGCGAGCGGGGGCTGAAGCTGAGCGGTGGGGAGAAGCAGCGGGTGGCCATCGC
TCGCACCATTCTCAAGGCTCCGCACATCGTTCTGCTGGACGAGGCAACGTCCGCACTGGA
TACATCTAACGAGAGGGCCATCCAAGCCTCTCTGGCCAAAGTCTGTGCCAACCGCACCAC
CATCGTTGTGGCGCACAGGCTCTCGACCGTGATCAGTGCCGACCAGATCCTTGTCATCAA
GGATGGCTGCATTGTGGAGAGAGGACGGCATGAGGCTCTGTTGTCCCAAGGTGGTGTGTA
TGCTGACATGTGGCAGCTACAGCAGCAGGGACAAGACGAAGTCTCTGAAGACACCAAGTC
CAAGGCTAAGACATGATGACCATAGTCGTGGCCATTTCCCTTCCAGAGGATAACCTGGAG
GGAAATCCATTTCAGCCCTTTTCCCTGCCATATTTCATTCTGGTCTTGGTGCTAGCTGTG
GTGAGGGAAAGGGCCTTTCAAAAAGGACTTTTGGGGGAAATAAAAGCGTGGACTGTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTGGGCGAGCGGGGGCTGAAGCTGAGCGGTGGGGAGAAGCAGCGGGTGGCCATCGC
TCGCACCATTCTCAAGGCTCCGCACATCGTTCTGCTGGACGAGGCAACGTCCGCACTGGA
TACATCTAACGAGAGGGCCATCCAAGCCTCTCTGGCCAAAGTCTGTGCCAACCGCACCAC
CATCGTTGTGGCGCACAGGCTCTCGACCGTGATCAGTGCCGACCAGATCCTTGTCATCAA
GGATGGCTGCATTGTGGAGAGAGGACGGCATGAGGCTCTGTTGTCCCAAGGTGGTGTGTA
TGCTGACATGTGGCAGCTACAGCAGCAGGGACAAGACGAAGTCTCTGAAGACACCAAGTC
CAAGGCTAAGACATGATGACCATAGTCGTGGCCATTTCCCTTCCAGAGGATAACCTGGAG
GGAAATCCATTTCAGCCCTTTTCCCTGCCATATTTCATTCTGGTCTTGGTGCTAGCTGTG
GTGAGGGAAAGGGCCTTTCAAAAAGGACTTTTGGGGGAAATAAAAGCGTGGACTGTGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-498, + strand, RNAz p=0.984717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-498, + strand, RNAz p=0.984717

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005689, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005689, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-104, gnl|bosTau2|chr2 (65155695-65155593)
               

               
               2-104, gnl|Hg17|chr2 (219901039-219900937)
               

               
               2-104, gnl|Mm7|chr1 (75395905-75395803)
               


               
               267-537, gnl|bosTau2|chr2 (65154926-65154658)
               

               
               267-537, gnl|Hg17|chr2 (219900274-219899999)
               

               
               267-537, gnl|Mm7|chr1 (75395238-75394971)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-104, gnl|bosTau2|chr2 (65155695-65155593)
               

               
               2-104, gnl|Hg17|chr2 (219901039-219900937)
               

               
               2-104, gnl|Mm7|chr1 (75395905-75395803)
               


               
               267-537, gnl|bosTau2|chr2 (65154926-65154658)
               

               
               267-537, gnl|Hg17|chr2 (219900274-219899999)
               

               
               267-537, gnl|Mm7|chr1 (75395238-75394971)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               col (0.390016)
               

               
               eye (0.341006)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               eye (0.341006)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	2-104, gnl\|bosTau2\|chr2 (65155695-65155593)
	2-104, gnl\|Hg17\|chr2 (219901039-219900937)
	2-104, gnl\|Mm7\|chr1 (75395905-75395803)

	267-537, gnl\|bosTau2\|chr2 (65154926-65154658)
	267-537, gnl\|Hg17\|chr2 (219900274-219899999)
	267-537, gnl\|Mm7\|chr1 (75395238-75394971)

	col (0.390016)
	eye (0.341006)
	nms (0.213858)
	cje (0.165235)
	cki (0.165235)
	ute (0.132784)
	cov (0.132153)