Non-Coding RNA Search

Ss1.1-rnms25_j12.5

Sequence:


               
               CAATCACATCACGGATCTCACTGTAGATTTTCCATGTCATTGTTGATGGGTTTTTAATCA
ATAAAAACTAGGGGTTTCTTCTCACCTGTCTTTCCACTCCCCAAACTGCCAAAAGCCGTG
GTTCTGTGTGACAGGCCTTCACTTTGGAGCCACAGGAAGAGGTGGAGGAGCTCTGGGCCT
GGGAAGACGGTGCTGTGGGAGCGACAGCAGGCAGCCCCATCTGGCTGGGGGGCTGGGAGT
CTCCGTCCTCAGGACTGTCCTGGTGACCACAGGTCCTGTGGGTGGTGTGGAGAGCTTGGG
GCTCGTGGGTGAGCTGCAACTAGACTGTGAGCATTTCAGGTGACACCAGTGTGGCAGTGC
TTGCAAATTCAAGCAATAAGAGGAGGGGGTCCTGGAAGCTTCTAGCAACCAGACATCCAG
ACCCAGATGGTGGGCTGATTTGGTGACAACAGTGTGCCTGTCCCACTGAGTGTCACACGC
ATGAAGGGGGGGTGGTGGGGGGGAATGACTCAAGGCTGGACCAGCATCCTGGTGGATCTG
ACGTGAAATTCCTGTCGAACAACAAAACTTTTAAATGGTTTGGTAGGATTATTTCTGTAT
TGAAAGTTTCTAATTATGCTTTTTAAAAAAAAAATACTAAAAATAAAGGTTCAAGCTGCC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATCACATCACGGATCTCACTGTAGATTTTCCATGTCATTGTTGATGGGTTTTTAATCA
ATAAAAACTAGGGGTTTCTTCTCACCTGTCTTTCCACTCCCCAAACTGCCAAAAGCCGTG
GTTCTGTGTGACAGGCCTTCACTTTGGAGCCACAGGAAGAGGTGGAGGAGCTCTGGGCCT
GGGAAGACGGTGCTGTGGGAGCGACAGCAGGCAGCCCCATCTGGCTGGGGGGCTGGGAGT
CTCCGTCCTCAGGACTGTCCTGGTGACCACAGGTCCTGTGGGTGGTGTGGAGAGCTTGGG
GCTCGTGGGTGAGCTGCAACTAGACTGTGAGCATTTCAGGTGACACCAGTGTGGCAGTGC
TTGCAAATTCAAGCAATAAGAGGAGGGGGTCCTGGAAGCTTCTAGCAACCAGACATCCAG
ACCCAGATGGTGGGCTGATTTGGTGACAACAGTGTGCCTGTCCCACTGAGTGTCACACGC
ATGAAGGGGGGGTGGTGGGGGGGAATGACTCAAGGCTGGACCAGCATCCTGGTGGATCTG
ACGTGAAATTCCTGTCGAACAACAAAACTTTTAAATGGTTTGGTAGGATTATTTCTGTAT
TGAAAGTTTCTAATTATGCTTTTTAAAAAAAAAATACTAAAAATAAAGGTTCAAGCTGCC
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-663, gnl|bosTau2|chr17 (38545304-38545965)
               

               
               1-663, gnl|Hg17|chr12 (118996350-118995623)
               

               
               1-663, gnl|Mm7|chr5 (114868998-114869653)
               


               
               291-654, gnl|bosTau2|chr1 (619572-619947)
               

               
               291-654, gnl|Hg17|chr12 (118995953-118995631)
               

               
               291-654, gnl|Mm7|chr5 (114869303-114869644)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-663, gnl|bosTau2|chr17 (38545304-38545965)
               

               
               1-663, gnl|Hg17|chr12 (118996350-118995623)
               

               
               1-663, gnl|Mm7|chr5 (114868998-114869653)
               


               
               291-654, gnl|bosTau2|chr1 (619572-619947)
               

               
               291-654, gnl|Hg17|chr12 (118995953-118995631)
               

               
               291-654, gnl|Mm7|chr5 (114869303-114869644)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-663, gnl\|bosTau2\|chr17 (38545304-38545965)
	1-663, gnl\|Hg17\|chr12 (118996350-118995623)
	1-663, gnl\|Mm7\|chr5 (114868998-114869653)

	291-654, gnl\|bosTau2\|chr1 (619572-619947)
	291-654, gnl\|Hg17\|chr12 (118995953-118995631)
	291-654, gnl\|Mm7\|chr5 (114869303-114869644)

	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	sto (0.179824)
	mcp (0.170648)
	fhi (0.169578)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)