Non-Coding RNA Search

Ss1.1-rnms29_o20.5

Sequence:


               
               ACCAAACGTGTATTTTCAGCTCCCTCCCTCCCAGCCCCCCAATTTCCTGCGGGCGGGTAC
AAAGGACCCTTTAAGCGTCCCTGGAGTTGGGAGGGAGGACCGAGGAACATAAAGCCTGTC
CTATCAGAATTCCAGGCTGGAGAAGGGTGAGTTCCAAGGACTCCTGGGTTCACCTCCTGT
CAGCACCGGCCCAGCCCGGGGCCTGGGGACCTGGGGTGATTTGGGGGACGGTGCTACACC
TGTCTCCGCTGTTTGTTTTACTTCCCCAAAAAATGGATCTTTTTTTTTCTAAGTGTCCCA
GAGAATGGGGAATTGTTCCTGTAAATATATATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAACGTGTATTTTCAGCTCCCTCCCTCCCAGCCCCCCAATTTCCTGCGGGCGGGTAC
AAAGGACCCTTTAAGCGTCCCTGGAGTTGGGAGGGAGGACCGAGGAACATAAAGCCTGTC
CTATCAGAATTCCAGGCTGGAGAAGGGTGAGTTCCAAGGACTCCTGGGTTCACCTCCTGT
CAGCACCGGCCCAGCCCGGGGCCTGGGGACCTGGGGTGATTTGGGGGACGGTGCTACACC
TGTCTCCGCTGTTTGTTTTACTTCCCCAAAAAATGGATCTTTTTTTTTCTAAGTGTCCCA
GAGAATGGGGAATTGTTCCTGTAAATATATATTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-336, - strand, RNAz p=0.935982
               

               
               196-336, + strand, RNAz p=0.997709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-336, - strand, RNAz p=0.935982
               

               
               196-336, + strand, RNAz p=0.997709

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-336, gnl|bosTau2|chrX (25648676-25648345)
               

               
               1-336, gnl|canFam2|chrX (41203298-41203741)
               

               
               1-336, gnl|dasNov1|scaffold_18717 (4152-3715)
               

               
               1-336, gnl|hg17|chrX (47251098-47251531)
               

               
               1-336, gnl|Hg17|chrX (47251517-47251182)
               

               
               1-336, gnl|loxAfr1|scaffold_172698 (4575-4139)
               

               
               1-336, gnl|mm7|chrX (19367236-19367665)
               

               
               1-336, gnl|Mm7|chrX (19367651-19367322)
               

               
               1-336, gnl|panTro1|chrX (48834730-48835163)
               

               
               1-336, gnl|rheMac2|chrX (45460536-45460967)
               

               
               1-336, gnl|rn3|chrX (12602050-12602489)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chrX (25648676-25648345)
               

               
               1-336, gnl|canFam2|chrX (41203298-41203741)
               

               
               1-336, gnl|dasNov1|scaffold_18717 (4152-3715)
               

               
               1-336, gnl|hg17|chrX (47251098-47251531)
               

               
               1-336, gnl|Hg17|chrX (47251517-47251182)
               

               
               1-336, gnl|loxAfr1|scaffold_172698 (4575-4139)
               

               
               1-336, gnl|mm7|chrX (19367236-19367665)
               

               
               1-336, gnl|Mm7|chrX (19367651-19367322)
               

               
               1-336, gnl|panTro1|chrX (48834730-48835163)
               

               
               1-336, gnl|rheMac2|chrX (45460536-45460967)
               

               
               1-336, gnl|rn3|chrX (12602050-12602489)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.427716)
               

               
               amn (0.417711)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               pla (0.133672)

	1-336, - strand, RNAz p=0.935982
	196-336, + strand, RNAz p=0.997709

	1-336, gnl\|bosTau2\|chrX (25648676-25648345)
	1-336, gnl\|canFam2\|chrX (41203298-41203741)
	1-336, gnl\|dasNov1\|scaffold_18717 (4152-3715)
	1-336, gnl\|hg17\|chrX (47251098-47251531)
	1-336, gnl\|Hg17\|chrX (47251517-47251182)
	1-336, gnl\|loxAfr1\|scaffold_172698 (4575-4139)
	1-336, gnl\|mm7\|chrX (19367236-19367665)
	1-336, gnl\|Mm7\|chrX (19367651-19367322)
	1-336, gnl\|panTro1\|chrX (48834730-48835163)
	1-336, gnl\|rheMac2\|chrX (45460536-45460967)
	1-336, gnl\|rn3\|chrX (12602050-12602489)