Non-Coding RNA Search

Ss1.1-rnms29_p13.5

Sequence:


               
               TACTGCAAGTATGGCGGCATCGAAGGTGAAGCAGGACATGCCCCCACCAGGGGGCTATGG
CCCTATCGACTACAAGCGGAACCTCCCACGTCGAGGACTGTCGGGCTACAGCATGTTCGC
TGTGGGCATCGGGACCTTGCTCTTCGGATACTGGAGCATGATGAAGTGGAACCGTGAGCG
CAGGCGCCTGCAGATCGAGGACTTCGAGGCCCGAATTGCACTGATGCCTCTGTTTCAGGC
AGAGAAGGACCGGAGAGTTCTCCAGATGCTTCGGGAGAACTTGGAGGAGGAGGCAATCAT
CATGAAGGATGTGCCGGACTGGAAGGTGGGCGAGTCCGTGTTCCACACAACGCGCTGGGT
CACCCCAATGATGGGTGAGCTCTATGGGCTGCGGACCAATGAAGAGATTCTCAGCGCCAC
CTATGGCTTCATATGGTACACGTAGGAACCTCCCCCTCTCAGGACAGCCGACCCCACCCC
CTCCCCACCGGAGAGAATAAACGCTCTGAAGACTGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGCAAGTATGGCGGCATCGAAGGTGAAGCAGGACATGCCCCCACCAGGGGGCTATGG
CCCTATCGACTACAAGCGGAACCTCCCACGTCGAGGACTGTCGGGCTACAGCATGTTCGC
TGTGGGCATCGGGACCTTGCTCTTCGGATACTGGAGCATGATGAAGTGGAACCGTGAGCG
CAGGCGCCTGCAGATCGAGGACTTCGAGGCCCGAATTGCACTGATGCCTCTGTTTCAGGC
AGAGAAGGACCGGAGAGTTCTCCAGATGCTTCGGGAGAACTTGGAGGAGGAGGCAATCAT
CATGAAGGATGTGCCGGACTGGAAGGTGGGCGAGTCCGTGTTCCACACAACGCGCTGGGT
CACCCCAATGATGGGTGAGCTCTATGGGCTGCGGACCAATGAAGAGATTCTCAGCGCCAC
CTATGGCTTCATATGGTACACGTAGGAACCTCCCCCTCTCAGGACAGCCGACCCCACCCC
CTCCCCACCGGAGAGAATAAACGCTCTGAAGACTGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57101296|ref|XP_533863.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101296|ref|XP_533863.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-105, gnl|bosTau2|chr7 (3953482-3953380)
               

               
               3-105, gnl|Hg17|chr19 (19488040-19488142)
               

               
               3-105, gnl|Mm7|chr8 (68356314-68356212)
               


               
               324-516, gnl|bosTau2|chr7 (3945454-3945260)
               

               
               324-516, gnl|Hg17|chr19 (19499814-19500007)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-105, gnl|bosTau2|chr7 (3953482-3953380)
               

               
               3-105, gnl|Hg17|chr19 (19488040-19488142)
               

               
               3-105, gnl|Mm7|chr8 (68356314-68356212)
               


               
               324-516, gnl|bosTau2|chr7 (3945454-3945260)
               

               
               324-516, gnl|Hg17|chr19 (19499814-19500007)

Expressed library(ies): 43 entry(ies)

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Expressed library(ies): 43 entry(ies)

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               nms (1.06929)
               

               
               fbs (1.05208)
               

               
               cov (0.925069)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               col (0.780031)
               

               
               cag (0.755972)
               

               
               hlv (0.696282)
               

               
               nca (0.684369)
               

               
               ecc (0.575175)
               

               
               che (0.545256)
               

               
               ton (0.526501)
               

               
               cje (0.495704)
               

               
               nco (0.485201)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (1.06929)
               

               
               fbs (1.05208)
               

               
               cov (0.925069)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               col (0.780031)
               

               
               cag (0.755972)
               

               
               hlv (0.696282)
               

               
               nca (0.684369)
               

               
               ecc (0.575175)
               

               
               che (0.545256)
               

               
               ton (0.526501)
               

               
               cje (0.495704)
               

               
               nco (0.485201)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	3-105, gnl\|bosTau2\|chr7 (3953482-3953380)
	3-105, gnl\|Hg17\|chr19 (19488040-19488142)
	3-105, gnl\|Mm7\|chr8 (68356314-68356212)

	324-516, gnl\|bosTau2\|chr7 (3945454-3945260)
	324-516, gnl\|Hg17\|chr19 (19499814-19500007)

	nms (1.06929)
	fbs (1.05208)
	cov (0.925069)
	fhi (0.847889)
	fce (0.814775)
	col (0.780031)
	cag (0.755972)
	hlv (0.696282)
	nca (0.684369)
	ecc (0.575175)
	che (0.545256)
	ton (0.526501)
	cje (0.495704)
	nco (0.485201)
	mas (0.42061)
	cst (0.420109)
	amn (0.417711)
	fli (0.405762)
	ute (0.398353)
	fcc (0.39557)
	elu (0.385356)
	nep (0.36785)
	ill (0.351185)
	eye (0.341006)
	cli (0.305623)
	hyp (0.285673)
	nmm (0.265604)
	cly (0.241284)
	eru (0.240096)
	cbe (0.239234)
	hea (0.204499)
	jej (0.197844)
	gul (0.177588)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	pty (0.142714)
	lnt (0.142308)
	ese (0.126502)
	ebs (0.118301)
	nbm (0.0993246)