Non-Coding RNA Search

Ss1.1-rnms3622b_l20.5

Sequence:


               
               TCACCAACAGCGCCGAGTGGGAGGCGGCCTGCGTGAAGGCCGGGCGGCAGGGCGGGGACC
TGGTGCACCCGCTGGTCTTCTGCCCCGAGCTGCACTTCTGCGAGTTCACCTCGGCCGTGG
CGGACATGAAGAACTCGGTGGCGGACCGGGACAACAGCCCCAGCTCCTGCGCCGGCCTCT
TCATCGCCTCGCACCTCGGCTTCGACTGGCCCGGGGTCTGGGTCCACCTGGATATCGCCG
CGCCCGTGCACGCCGGAGAACGCGCCACGGGCTTCGGCGTCGCCCTCCTGCTGGCGCTCT
TCGGCGGGGCCTCCGAGGACCCTCTGCTGAACCTGGTGTCCCCGCTCGGCTGTGAGGTGG
ACCCCCAGGAGGGGGACGTGGAGAGGGACTCCAAGAGGCGCAGGCTGGTGTGACGCCCAC
CGCCCCGCCCGGCCGCACAGGCCTTACCTCACTTTGCACTGATGCCTCGTGAGCAGTGGG
AAGGTCATACCTGAAGATGTGCTTTGCCTTGTTTTGTTTTCGTTGCCATGGTGATGGAAG
CGGCTCCTTCTTATGTCTTAGACGACAGCTCAGGGTTTGCCGGGCCCCGGGGAGGGGAGC
GGGCAGCGACGGGCTTGTTTCTGTTTGGTTCCCCGCCAGCTTCTGCCGACCGGGCTCCCT
CCTGGGGCTGCACGCCCTCGGGGTCCCAGGGTGCATGGGGGCCCTGACACTCTTGGCCAA
GTGGCCTGTGGGCCCCCTGCCCGCCTGGTGTCCACGTTGGGTGCCCATTCTCCAGCCCTG
TGTGTGGCACCCACGTGACAGAGAGCCCAGGCCCGCGCTCAGCCAGGGCTGCCGCTGCCT
CCAGGCAGCCCACCCCTCTGAGTGGATGGGGGTGACTTGCTTCGGGGACCCGATTTTTGG
AGCAAGAGGAATCTCCCCTGGGCCCTTAGAATTCACTGGAGCTTGGATTAAATATGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCAACAGCGCCGAGTGGGAGGCGGCCTGCGTGAAGGCCGGGCGGCAGGGCGGGGACC
TGGTGCACCCGCTGGTCTTCTGCCCCGAGCTGCACTTCTGCGAGTTCACCTCGGCCGTGG
CGGACATGAAGAACTCGGTGGCGGACCGGGACAACAGCCCCAGCTCCTGCGCCGGCCTCT
TCATCGCCTCGCACCTCGGCTTCGACTGGCCCGGGGTCTGGGTCCACCTGGATATCGCCG
CGCCCGTGCACGCCGGAGAACGCGCCACGGGCTTCGGCGTCGCCCTCCTGCTGGCGCTCT
TCGGCGGGGCCTCCGAGGACCCTCTGCTGAACCTGGTGTCCCCGCTCGGCTGTGAGGTGG
ACCCCCAGGAGGGGGACGTGGAGAGGGACTCCAAGAGGCGCAGGCTGGTGTGACGCCCAC
CGCCCCGCCCGGCCGCACAGGCCTTACCTCACTTTGCACTGATGCCTCGTGAGCAGTGGG
AAGGTCATACCTGAAGATGTGCTTTGCCTTGTTTTGTTTTCGTTGCCATGGTGATGGAAG
CGGCTCCTTCTTATGTCTTAGACGACAGCTCAGGGTTTGCCGGGCCCCGGGGAGGGGAGC
GGGCAGCGACGGGCTTGTTTCTGTTTGGTTCCCCGCCAGCTTCTGCCGACCGGGCTCCCT
CCTGGGGCTGCACGCCCTCGGGGTCCCAGGGTGCATGGGGGCCCTGACACTCTTGGCCAA
GTGGCCTGTGGGCCCCCTGCCCGCCTGGTGTCCACGTTGGGTGCCCATTCTCCAGCCCTG
TGTGTGGCACCCACGTGACAGAGAGCCCAGGCCCGCGCTCAGCCAGGGCTGCCGCTGCCT
CCAGGCAGCCCACCCCTCTGAGTGGATGGGGGTGACTTGCTTCGGGGACCCGATTTTTGG
AGCAAGAGGAATCTCCCCTGGGCCCTTAGAATTCACTGGAGCTTGGATTAAATATGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZPF7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZPF7_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               722-825, - strand, RNAz p=0.989459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               722-825, - strand, RNAz p=0.989459

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-144, gnl|bosTau2|chr13 (38089051-38088908)
               

               
               1-144, gnl|canFam2|chr24 (46458393-46458578)
               

               
               1-144, gnl|danRer3|chrNA (107409707-107409894)
               

               
               1-144, gnl|dasNov1|scaffold_134313 (6310-6498)
               

               
               1-144, gnl|echTel1|scaffold_90209 (696-884)
               

               
               1-144, gnl|fr1|chrUn (176362524-176362338)
               

               
               1-144, gnl|galGal2|chr20 (10581125-10580937)
               

               
               1-144, gnl|hg17|chr20 (56722377-56722565)
               

               
               1-144, gnl|Hg17|chr20 (56722414-56722557)
               

               
               1-144, gnl|mm7|chr2 (173865339-173865527)
               

               
               1-144, gnl|Mm7|chr2 (173865376-173865519)
               

               
               1-144, gnl|monDom2|scaffold_1 (173193335-173193520)
               

               
               1-144, gnl|oryCun1|scaffold_168488 (896-1084)
               

               
               1-144, gnl|panTro1|chr21 (59720056-59720244)
               

               
               1-144, gnl|rheMac2|chr10 (5815496-5815308)
               

               
               1-144, gnl|rn3|chr3 (164952191-164952379)
               

               
               1-144, gnl|tetNig1|chr11 (2142842-2143028)
               


               
               255-959, gnl|bosTau2|chr13 (38087863-38087152)
               

               
               255-959, gnl|Hg17|chr20 (56723631-56724293)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr13 (38089051-38088908)
               

               
               1-144, gnl|canFam2|chr24 (46458393-46458578)
               

               
               1-144, gnl|danRer3|chrNA (107409707-107409894)
               

               
               1-144, gnl|dasNov1|scaffold_134313 (6310-6498)
               

               
               1-144, gnl|echTel1|scaffold_90209 (696-884)
               

               
               1-144, gnl|fr1|chrUn (176362524-176362338)
               

               
               1-144, gnl|galGal2|chr20 (10581125-10580937)
               

               
               1-144, gnl|hg17|chr20 (56722377-56722565)
               

               
               1-144, gnl|Hg17|chr20 (56722414-56722557)
               

               
               1-144, gnl|mm7|chr2 (173865339-173865527)
               

               
               1-144, gnl|Mm7|chr2 (173865376-173865519)
               

               
               1-144, gnl|monDom2|scaffold_1 (173193335-173193520)
               

               
               1-144, gnl|oryCun1|scaffold_168488 (896-1084)
               

               
               1-144, gnl|panTro1|chr21 (59720056-59720244)
               

               
               1-144, gnl|rheMac2|chr10 (5815496-5815308)
               

               
               1-144, gnl|rn3|chr3 (164952191-164952379)
               

               
               1-144, gnl|tetNig1|chr11 (2142842-2143028)
               


               
               255-959, gnl|bosTau2|chr13 (38087863-38087152)
               

               
               255-959, gnl|Hg17|chr20 (56723631-56724293)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.427716)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)

	1-144, gnl\|bosTau2\|chr13 (38089051-38088908)
	1-144, gnl\|canFam2\|chr24 (46458393-46458578)
	1-144, gnl\|danRer3\|chrNA (107409707-107409894)
	1-144, gnl\|dasNov1\|scaffold_134313 (6310-6498)
	1-144, gnl\|echTel1\|scaffold_90209 (696-884)
	1-144, gnl\|fr1\|chrUn (176362524-176362338)
	1-144, gnl\|galGal2\|chr20 (10581125-10580937)
	1-144, gnl\|hg17\|chr20 (56722377-56722565)
	1-144, gnl\|Hg17\|chr20 (56722414-56722557)
	1-144, gnl\|mm7\|chr2 (173865339-173865527)
	1-144, gnl\|Mm7\|chr2 (173865376-173865519)
	1-144, gnl\|monDom2\|scaffold_1 (173193335-173193520)
	1-144, gnl\|oryCun1\|scaffold_168488 (896-1084)
	1-144, gnl\|panTro1\|chr21 (59720056-59720244)
	1-144, gnl\|rheMac2\|chr10 (5815496-5815308)
	1-144, gnl\|rn3\|chr3 (164952191-164952379)
	1-144, gnl\|tetNig1\|chr11 (2142842-2143028)

	255-959, gnl\|bosTau2\|chr13 (38087863-38087152)
	255-959, gnl\|Hg17\|chr20 (56723631-56724293)

	nms (0.427716)
	med (0.232504)
	fty (0.17584)
	mcp (0.170648)
	eep (0.122564)