Non-Coding RNA Search

Ss1.1-rnms36_k18.5

Sequence:


               
               AGCTGCGCCTTTACTTTCCAACACTACTCGCCCTTTCTGAGCCGGTTCCGCGATAGAGGT
GACCCGACTGCCTGAAGCTCACGTTGCAGGTGCTGGAAGTGCGCGCGCAGTTACCAATCA
TGTCTGAACCAATCCGAGTGCTTGTGACTGGAGCAGCTGGTCAGATTGCATATTCACTGC
TGTACAGTATTGGAAATGGATCTGTCTTCGGTAAAGACCAGCCTATCATCCTTGTGCTGT
TGGATATCACCCCTATGATGGGTGTCCTGGATGGTGTCCTGATGGAGCTGCAGGACTGTG
CCCTTCCCCTCCTGAAAGATGTCATTGCAACAGATAAAGAAGAGATTGCCTTCAAAGACC
TGGACGTTGCCATTCTCGTGGGTTCCATGCCAAGAAGGGATGGCATGGAGAGGAAAGATT
TACTCAAAGCAAATGTGAAAATCTTCAAATGCCAGGGTGCTGCCTTGGACAAATATGCTA
AGAAGTCAGTTAAGGTTATCGTGGTGGGAAACCCAGCCAATACCAACTGCCTGACTGCCT
CCAAGTCGGCTCCATCCATTCCCAAGGAGAACTTCAGCTGCTTGACTCGTTTGGATCACA
ACCGAGCTAAAGCACAGATTGCTCTCAAACTTGGTGTGACTTCTGATGATGTCAAGAATG
TCATCATCTGGGGAAACCATTCCTCAACTCAGTATCCAGATGTCAACCATGCCAAGGTGA
AACTGCAGGCAAAGGAAGTTGGTGTTTATGAAGCTGTGAAGGATGACAGCTGGCTCAAGG
GAGAGTTCATCACGACTGTGCAGCAGCGCGGTGCTGCTGTCATCAAGGCTCGAAAACTGT
CCAGTGCAATGTCTGCGGCAAAAGCCATTTGTGACCATGTCAGAGACATCTGGTTTGGAA
CCCCAGAGGGAGAGTTTGTGTCCATGGGCATTATCTCTGATGGCAACTCCTATGGTGTTC
CTGATGATCTGCTCTACTCATTCCCTGTTACAATCAAGGATAAGACCTGGAAAATTGTTG
AAGGTCTCCCTATTAATGATTTCTCTCGTGAGAAGATGGACCTCACTGCAAAGGAACTAG
CAGAAGAAAAAGAAACTGCATTTGAATTTCTTTCCTCTGCCTGATTAAACAATCATTTCA
ATGTTACTAAATGCCCCAAAGCTGAAAAATCTAAATGTCCTTTTTGACCCTAGTACCAAA
TAATAATAATGCTATCCTTAAATTACTAGTGAAAAATAACACACTTTAAAGATTGTGTGC
TTCTTGGTACAAATTTGTGACAGTTTATCATCATGCTGTTAGTGCCACATTCTAAAATAA
ATATATATCCAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCGCCTTTACTTTCCAACACTACTCGCCCTTTCTGAGCCGGTTCCGCGATAGAGGT
GACCCGACTGCCTGAAGCTCACGTTGCAGGTGCTGGAAGTGCGCGCGCAGTTACCAATCA
TGTCTGAACCAATCCGAGTGCTTGTGACTGGAGCAGCTGGTCAGATTGCATATTCACTGC
TGTACAGTATTGGAAATGGATCTGTCTTCGGTAAAGACCAGCCTATCATCCTTGTGCTGT
TGGATATCACCCCTATGATGGGTGTCCTGGATGGTGTCCTGATGGAGCTGCAGGACTGTG
CCCTTCCCCTCCTGAAAGATGTCATTGCAACAGATAAAGAAGAGATTGCCTTCAAAGACC
TGGACGTTGCCATTCTCGTGGGTTCCATGCCAAGAAGGGATGGCATGGAGAGGAAAGATT
TACTCAAAGCAAATGTGAAAATCTTCAAATGCCAGGGTGCTGCCTTGGACAAATATGCTA
AGAAGTCAGTTAAGGTTATCGTGGTGGGAAACCCAGCCAATACCAACTGCCTGACTGCCT
CCAAGTCGGCTCCATCCATTCCCAAGGAGAACTTCAGCTGCTTGACTCGTTTGGATCACA
ACCGAGCTAAAGCACAGATTGCTCTCAAACTTGGTGTGACTTCTGATGATGTCAAGAATG
TCATCATCTGGGGAAACCATTCCTCAACTCAGTATCCAGATGTCAACCATGCCAAGGTGA
AACTGCAGGCAAAGGAAGTTGGTGTTTATGAAGCTGTGAAGGATGACAGCTGGCTCAAGG
GAGAGTTCATCACGACTGTGCAGCAGCGCGGTGCTGCTGTCATCAAGGCTCGAAAACTGT
CCAGTGCAATGTCTGCGGCAAAAGCCATTTGTGACCATGTCAGAGACATCTGGTTTGGAA
CCCCAGAGGGAGAGTTTGTGTCCATGGGCATTATCTCTGATGGCAACTCCTATGGTGTTC
CTGATGATCTGCTCTACTCATTCCCTGTTACAATCAAGGATAAGACCTGGAAAATTGTTG
AAGGTCTCCCTATTAATGATTTCTCTCGTGAGAAGATGGACCTCACTGCAAAGGAACTAG
CAGAAGAAAAAGAAACTGCATTTGAATTTCTTTCCTCTGCCTGATTAAACAATCATTTCA
ATGTTACTAAATGCCCCAAAGCTGAAAAATCTAAATGTCCTTTTTGACCCTAGTACCAAA
TAATAATAATGCTATCCTTAAATTACTAGTGAAAAATAACACACTTTAAAGATTGTGTGC
TTCTTGGTACAAATTTGTGACAGTTTATCATCATGCTGTTAGTGCCACATTCTAAAATAA
ATATATATCCAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MDHC_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               MDHC_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               303-418, - strand, RNAz p=0.863914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-418, - strand, RNAz p=0.863914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-1350, gnl|bosTau2|chr11 (44339793-44341090)
               

               
               38-1350, gnl|Hg17|chr6 (16215753-16217034)
               

               
               38-1350, gnl|Mm7|chr11 (21518743-21509251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1350, gnl|bosTau2|chr11 (44339793-44341090)
               

               
               38-1350, gnl|Hg17|chr6 (16215753-16217034)
               

               
               38-1350, gnl|Mm7|chr11 (21518743-21509251)

Expressed library(ies): 66 entry(ies)

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Expressed library(ies): 66 entry(ies)

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               fbs (1.92881)
               

               
               nms (1.71086)
               

               
               pro (1.5361)
               

               
               spc (1.24702)
               

               
               fhi (1.18704)
               

               
               fat (1.17942)
               

               
               hea (1.02249)
               

               
               vin (0.997672)
               

               
               hlv (0.974795)
               

               
               duo (0.864006)
               

               
               mas (0.84122)
               

               
               ssp (0.813118)
               

               
               isp (0.75188)
               

               
               bfe (0.749288)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               ece (0.687916)
               

               
               ste (0.676041)
               

               
               ret (0.643666)
               

               
               fco (0.628832)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               cbe (0.478469)
               

               
               tbr (0.462535)
               

               
               hyp (0.42851)
               

               
               cty (0.41632)
               

               
               lyg (0.399308)
               

               
               eje (0.395335)
               

               
               ldo (0.38801)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 66 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (1.92881)
               

               
               nms (1.71086)
               

               
               pro (1.5361)
               

               
               spc (1.24702)
               

               
               fhi (1.18704)
               

               
               fat (1.17942)
               

               
               hea (1.02249)
               

               
               vin (0.997672)
               

               
               hlv (0.974795)
               

               
               duo (0.864006)
               

               
               mas (0.84122)
               

               
               ssp (0.813118)
               

               
               isp (0.75188)
               

               
               bfe (0.749288)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               ece (0.687916)
               

               
               ste (0.676041)
               

               
               ret (0.643666)
               

               
               fco (0.628832)
               

               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               cbe (0.478469)
               

               
               tbr (0.462535)
               

               
               hyp (0.42851)
               

               
               cty (0.41632)
               

               
               lyg (0.399308)
               

               
               eje (0.395335)
               

               
               ldo (0.38801)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	38-1350, gnl\|bosTau2\|chr11 (44339793-44341090)
	38-1350, gnl\|Hg17\|chr6 (16215753-16217034)
	38-1350, gnl\|Mm7\|chr11 (21518743-21509251)

	fbs (1.92881)
	nms (1.71086)
	pro (1.5361)
	spc (1.24702)
	fhi (1.18704)
	fat (1.17942)
	hea (1.02249)
	vin (0.997672)
	hlv (0.974795)
	duo (0.864006)
	mas (0.84122)
	ssp (0.813118)
	isp (0.75188)
	bfe (0.749288)
	nep (0.7357)
	ton (0.702001)
	ece (0.687916)
	ste (0.676041)
	ret (0.643666)
	fco (0.628832)
	fcc (0.593354)
	fce (0.543183)
	fty (0.527519)
	sin (0.524843)
	rec (0.519211)
	cki (0.495704)
	jej (0.494609)
	mga (0.480615)
	cbe (0.478469)
	tbr (0.462535)
	hyp (0.42851)
	cty (0.41632)
	lyg (0.399308)
	eje (0.395335)
	ldo (0.38801)
	elu (0.385356)
	sug (0.381874)
	ese (0.379507)
	ebs (0.354904)
	ill (0.351185)
	med (0.348756)
	ski (0.29347)
	nca (0.273748)
	mgp (0.230681)
	cbl (0.229595)
	tes (0.207814)
	fli (0.202881)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	mcp (0.170648)
	cli (0.152812)
	cag (0.151194)
	pty (0.142714)
	csk (0.140746)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	cbr (0.127975)
	thg (0.126791)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)