Non-Coding RNA Search

Ss1.1-rova001_b14.5

Sequence:


               
               ACCGGCATTGGCACGCGCTATGGCAAATGAAGTACAAGTCCAGCTCTCCCCACTGAAAGG
GGGGCATCCTCCTGCAGTAAAAGCTGGAGGAAAACGAATTTCCAAAAAACAAGAAATTGG
CGTCTTGGAGAGACACACCAAAAGAACAGGATTAGAGAAAACCAGCGCCATTGCAAATGT
TGCCAAAATCCAGACGATGGATGCCCTGAATGACACGCTGGAGAAGCTCAGCCATAAATT
TCCAGCAATAGTGCACATGGCACATCAAAAACCCAGACCTGCTCTGGAGAAGGTCACTCC
ACTGAAAAGGATCTACATTATTCAGCAGCCTCGCAAATGTTAAGCTGGGACGTAAAACAC
AGCCAACTAGCCAACTGCCTTGAATGTCTGAGAGCTTAGCGAAAAGGACCAAAACTTTCC
TTAGGCCCACTTGCTTGGTAAATAAAACAGCTTTTGTATCTTCTCTTTTGACTTTAGACA
ATAAAGCATCCAAAATTGTACATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGGCATTGGCACGCGCTATGGCAAATGAAGTACAAGTCCAGCTCTCCCCACTGAAAGG
GGGGCATCCTCCTGCAGTAAAAGCTGGAGGAAAACGAATTTCCAAAAAACAAGAAATTGG
CGTCTTGGAGAGACACACCAAAAGAACAGGATTAGAGAAAACCAGCGCCATTGCAAATGT
TGCCAAAATCCAGACGATGGATGCCCTGAATGACACGCTGGAGAAGCTCAGCCATAAATT
TCCAGCAATAGTGCACATGGCACATCAAAAACCCAGACCTGCTCTGGAGAAGGTCACTCC
ACTGAAAAGGATCTACATTATTCAGCAGCCTCGCAAATGTTAAGCTGGGACGTAAAACAC
AGCCAACTAGCCAACTGCCTTGAATGTCTGAGAGCTTAGCGAAAAGGACCAAAACTTTCC
TTAGGCCCACTTGCTTGGTAAATAAAACAGCTTTTGTATCTTCTCTTTTGACTTTAGACA
ATAAAGCATCCAAAATTGTACATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14738297|ref|XP_043500.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14738297|ref|XP_043500.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               170-365, gnl|bosTau2|chr20 (7439645-7439451)
               

               
               170-365, gnl|Hg17|chr5 (68314204-68314493)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-365, gnl|bosTau2|chr20 (7439645-7439451)
               

               
               170-365, gnl|Hg17|chr5 (68314204-68314493)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ova (0.645661)
               

               
               csk (0.281492)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.645661)
               

               
               csk (0.281492)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)

	170-365, gnl\|bosTau2\|chr20 (7439645-7439451)
	170-365, gnl\|Hg17\|chr5 (68314204-68314493)

	ova (0.645661)
	csk (0.281492)
	nep (0.183925)
	ton (0.1755)
	lnt (0.142308)
	hlv (0.139256)
	ret (0.128733)