Ss1.1-rova001_n23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACCAGCACCAGCTCAGCTGTCCTCCCTAAAAACTGTCCGTCCCTCTAGACCACCACT TTCCATCATACCCCAGTTTTCTAGACCCTTTGTTCCTGGGCAAGGAGATGCCAGATACCC GTTGCTTGGCCAGCCCCTGCAGTACAACCCTCCTGCTGTTCTGCATGGACACATTCCAGC CCAACAGGGTCAGTCTGGCAACAGGCACGGAAACCGAGGAAGGAAACAAGCTAAAAAAGC TGCATCCACCGACCTTGGTGCAGGAGAAGCAGTTGTTGGGAAGGTCTTGGAAATTACTGA ACTGCCAGATGGAATAACTCGAATGGAAGCTGAGAAGCTTTTTGGGGAACTCTTTAAAAT TGGCGCCAAGATCCGGTGGCTCCGGGACCCCCAGTCTCAGCCCCAGCTTCGTCGTCACCC CCTCTGCTGTGGCAGCGGGGACAACACTGTTAACCCTGAACGCTCTAAACCTAGTGACTT GGCCTCCACATACACCGTCTTAGCCACATTCCCCTCCATTTCAGCTGCGCAGAATGCATT GAAGAAACAAATTAACTCGGTTAACAAGTTTAAGCTGAGAACGAGCAAGAAGCACTATGA CTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAACAGCCTCCATGGACCTTTGACCTTTG TGATTCCCCTGTTCTTGTCCATCTTTAATTGGCTTCGTACCTGGGGCTTCTATTAATATG ATAGAGACTCCTAGGATGTGTGGTTGTGGTGTTACAACTTATGAAGACAGGCCAGTGATC CATCAGGGGGGAGGGAATACACATTTCACCCCAAATGATTATAGAAATCCACATCAAAAT GATACAGAGTTAGCAGCTTTTTCTGAGGAAATGCTGTTCAAATGCCTCCTAAATTTTATA GTTATTTTGTTTTATATTTCTGAATTCTTGTATCAGATCCAAAGCTCTATTGTACAGCAA ATTATTCTTCAAAATGATTACAACCAGTTGCAACCTGTATTTTTTTTTTTTTTTTCCAGC CAGCACGGTTTGACCCACCATAGAATTTGGGGAGGAAAGAATCTAGGAGTGGAATAACCA AGACGAAACCATGTGCTGTCTTTTTGTGGGGCTGGAGGGTGACTAAGGAGAGCCCACAAA TAGAAGCTTATTACTCTTCCCCTGTATCTCCAAACACAGAAACAAATTCTAGAAAATAGA GAACTCCTTCATAAGGTCCTTCCCTTATTCATTTAGGTCGTATGAACATTAAGTGTAAGG TAAATTATGTTCTTAACGCCTCTTAATCAAACCACTTAGATTCAAAGGGGAATAGAATTA CTCTAGGCAGGCAGATACTTCCACTTTTTTTTTTAAGTGTCCCTTCAATAACTAAATGCC ACTTTTGCATTCCCCTCCTTGTGGATTTTTTGTCACCCGAGGAAATGCATTTGATCAGTG CTGGAAACTTCTTAAGTGGTTTAAAATGTGTTTTCATTGTTTGCAGCTGATCACTGGACA TCGAAGATTCATTGCACTTATGAACAAGGAAACTTTTTTTCAATTTCTGTGTAATTTGCA AGGCTGTACAATGTGTGCTGATGCAAGCAAGCCTTTTTCTGTTCAAGGAATAAATGTTTA CAAGTGTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACCAGCACCAGCTCAGCTGTCCTCCCTAAAAACTGTCCGTCCCTCTAGACCACCACT TTCCATCATACCCCAGTTTTCTAGACCCTTTGTTCCTGGGCAAGGAGATGCCAGATACCC GTTGCTTGGCCAGCCCCTGCAGTACAACCCTCCTGCTGTTCTGCATGGACACATTCCAGC CCAACAGGGTCAGTCTGGCAACAGGCACGGAAACCGAGGAAGGAAACAAGCTAAAAAAGC TGCATCCACCGACCTTGGTGCAGGAGAAGCAGTTGTTGGGAAGGTCTTGGAAATTACTGA ACTGCCAGATGGAATAACTCGAATGGAAGCTGAGAAGCTTTTTGGGGAACTCTTTAAAAT TGGCGCCAAGATCCGGTGGCTCCGGGACCCCCAGTCTCAGCCCCAGCTTCGTCGTCACCC CCTCTGCTGTGGCAGCGGGGACAACACTGTTAACCCTGAACGCTCTAAACCTAGTGACTT GGCCTCCACATACACCGTCTTAGCCACATTCCCCTCCATTTCAGCTGCGCAGAATGCATT GAAGAAACAAATTAACTCGGTTAACAAGTTTAAGCTGAGAACGAGCAAGAAGCACTATGA CTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAACAGCCTCCATGGACCTTTGACCTTTG TGATTCCCCTGTTCTTGTCCATCTTTAATTGGCTTCGTACCTGGGGCTTCTATTAATATG ATAGAGACTCCTAGGATGTGTGGTTGTGGTGTTACAACTTATGAAGACAGGCCAGTGATC CATCAGGGGGGAGGGAATACACATTTCACCCCAAATGATTATAGAAATCCACATCAAAAT GATACAGAGTTAGCAGCTTTTTCTGAGGAAATGCTGTTCAAATGCCTCCTAAATTTTATA GTTATTTTGTTTTATATTTCTGAATTCTTGTATCAGATCCAAAGCTCTATTGTACAGCAA ATTATTCTTCAAAATGATTACAACCAGTTGCAACCTGTATTTTTTTTTTTTTTTTCCAGC CAGCACGGTTTGACCCACCATAGAATTTGGGGAGGAAAGAATCTAGGAGTGGAATAACCA AGACGAAACCATGTGCTGTCTTTTTGTGGGGCTGGAGGGTGACTAAGGAGAGCCCACAAA TAGAAGCTTATTACTCTTCCCCTGTATCTCCAAACACAGAAACAAATTCTAGAAAATAGA GAACTCCTTCATAAGGTCCTTCCCTTATTCATTTAGGTCGTATGAACATTAAGTGTAAGG TAAATTATGTTCTTAACGCCTCTTAATCAAACCACTTAGATTCAAAGGGGAATAGAATTA CTCTAGGCAGGCAGATACTTCCACTTTTTTTTTTAAGTGTCCCTTCAATAACTAAATGCC ACTTTTGCATTCCCCTCCTTGTGGATTTTTTGTCACCCGAGGAAATGCATTTGATCAGTG CTGGAAACTTCTTAAGTGGTTTAAAATGTGTTTTCATTGTTTGCAGCTGATCACTGGACA TCGAAGATTCATTGCACTTATGAACAAGGAAACTTTTTTTCAATTTCTGTGTAATTTGCA AGGCTGTACAATGTGTGCTGATGCAAGCAAGCCTTTTTCTGTTCAAGGAATAAATGTTTA CAAGTGTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 859-978, - strand, RNAz p=0.965728 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 859-978, - strand, RNAz p=0.965728 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-105, gnl|bosTau2|chr2 (38002104-38002000) | |
| 1-105, gnl|canFam2|chr19 (41516880-41517069) | |
| 1-105, gnl|danRer3|chrUn (78548379-78548532) | |
| 1-105, gnl|dasNov1|scaffold_208449 (2386-2196) | |
| 1-105, gnl|echTel1|scaffold_314319 (105856-105681) | |
| 1-105, gnl|fr1|chrUn (206329405-206329566) | |
| 1-105, gnl|galGal2|chr7 (31303370-31303525) | |
| 1-105, gnl|hg17|chr2 (136306845-136307036) | |
| 1-105, gnl|Hg17|chr2 (136306893-136306997) | |
| 1-105, gnl|loxAfr1|scaffold_3003 (96320-96129) | |
| 1-105, gnl|mm7|chr1 (128111447-128111637) | |
| 1-105, gnl|Mm7|chr1 (128111495-128111599) | |
| 1-105, gnl|monDom2|scaffold_2 (21296730-21296917) | |
| 1-105, gnl|oryCun1|scaffold_214471 (64602-64791) | |
| 1-105, gnl|panTro1|chr13 (25294981-25295172) | |
| 1-105, gnl|rheMac2|chr13 (116444051-116443860) | |
| 1-105, gnl|rn3|chr13 (40949669-40949859) | |
| 1-105, gnl|tetNig1|chr11 (2792803-2792927) | |
| 1-105, gnl|xenTro1|scaffold_31 (3155152-3154995) | |
| 271-1628, gnl|bosTau2|chr2 (37999172-37997813) | |
| 271-1628, gnl|Hg17|chr2 (136315237-136316571) | |
| 271-1628, gnl|Mm7|chr1 (128116526-128117867) | |
| 1125-1277, gnl|bosTau2|chr11 (34777356-34777206) | |
| 1125-1277, gnl|Hg17|chr2 (136316074-136316222) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-105, gnl|bosTau2|chr2 (38002104-38002000) | |
| 1-105, gnl|canFam2|chr19 (41516880-41517069) | |
| 1-105, gnl|danRer3|chrUn (78548379-78548532) | |
| 1-105, gnl|dasNov1|scaffold_208449 (2386-2196) | |
| 1-105, gnl|echTel1|scaffold_314319 (105856-105681) | |
| 1-105, gnl|fr1|chrUn (206329405-206329566) | |
| 1-105, gnl|galGal2|chr7 (31303370-31303525) | |
| 1-105, gnl|hg17|chr2 (136306845-136307036) | |
| 1-105, gnl|Hg17|chr2 (136306893-136306997) | |
| 1-105, gnl|loxAfr1|scaffold_3003 (96320-96129) | |
| 1-105, gnl|mm7|chr1 (128111447-128111637) | |
| 1-105, gnl|Mm7|chr1 (128111495-128111599) | |
| 1-105, gnl|monDom2|scaffold_2 (21296730-21296917) | |
| 1-105, gnl|oryCun1|scaffold_214471 (64602-64791) | |
| 1-105, gnl|panTro1|chr13 (25294981-25295172) | |
| 1-105, gnl|rheMac2|chr13 (116444051-116443860) | |
| 1-105, gnl|rn3|chr13 (40949669-40949859) | |
| 1-105, gnl|tetNig1|chr11 (2792803-2792927) | |
| 1-105, gnl|xenTro1|scaffold_31 (3155152-3154995) | |
| 271-1628, gnl|bosTau2|chr2 (37999172-37997813) | |
| 271-1628, gnl|Hg17|chr2 (136315237-136316571) | |
| 271-1628, gnl|Mm7|chr1 (128116526-128117867) | |
| 1125-1277, gnl|bosTau2|chr11 (34777356-34777206) | |
| 1125-1277, gnl|Hg17|chr2 (136316074-136316222) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| sme (0.610874) | |
| fhi (0.508733) | |
| ova (0.258264) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| fhi (0.508733) | |
| ova (0.258264) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) |