Ss1.1-rova002_h18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGCGGCTCGCCGAGGGTATAGCATAGCTGTCTGGAAGGGCTGTGCTTTGCAAAAGGA TCAACATGCCTTTGGCTAGAGATTTACTGCATCCTTCCTTGGAAGAGGAGAAGAAAAAAC ATAAAAAGAAACGTCTGGTTCAGAGTCCAAATTCTTACTTTATGGATGTAAAATGTCCAG GTTGCTACAAAATTACCACGGTTTTCAGCCATGCTCAGACAGTGGTGCTTTGTGTAGGTT GTTCAACAGTGTTGTGCCAGCCGACAGGAGGGAAGGCCAGACTCACAGAAGGATGTTCAT TTAGAAGAAAGCAACACTAAAGATGCACACAACCTTTTGAATTTCGTTCTATCGCAGAAA GCCTTATCAGTTCAATAAATCTAGTTAATCTACCAAGATAATGTCATTAGGTTCAATTTT ATAAGGAATACAATAGCACTCTCATATTTTGGTGTTAGTTTTTCAATAAAGTTTTGATTA TGGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGCGGCTCGCCGAGGGTATAGCATAGCTGTCTGGAAGGGCTGTGCTTTGCAAAAGGA TCAACATGCCTTTGGCTAGAGATTTACTGCATCCTTCCTTGGAAGAGGAGAAGAAAAAAC ATAAAAAGAAACGTCTGGTTCAGAGTCCAAATTCTTACTTTATGGATGTAAAATGTCCAG GTTGCTACAAAATTACCACGGTTTTCAGCCATGCTCAGACAGTGGTGCTTTGTGTAGGTT GTTCAACAGTGTTGTGCCAGCCGACAGGAGGGAAGGCCAGACTCACAGAAGGATGTTCAT TTAGAAGAAAGCAACACTAAAGATGCACACAACCTTTTGAATTTCGTTCTATCGCAGAAA GCCTTATCAGTTCAATAAATCTAGTTAATCTACCAAGATAATGTCATTAGGTTCAATTTT ATAAGGAATACAATAGCACTCTCATATTTTGGTGTTAGTTTTTCAATAAAGTTTTGATTA TGGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-528, gnl|bosTau2|chr5 (70768905-70769425) | |
| 1-528, gnl|Hg17|chr16 (57680183-57680678) | |
| 1-528, gnl|Mm7|chr3 (66070288-66069812) | |
| 4-218, gnl|bosTau2|chr3 (61197133-61196917) | |
| 4-218, gnl|Hg17|chr16 (57680186-57680394) | |
| 4-218, gnl|Mm7|chr3 (66070288-66070092) | |
| 72-182, gnl|bosTau2|chr10 (31052700-31052590) | |
| 72-182, gnl|canFam2|chr30 (30748649-30748730) | |
| 72-182, gnl|danRer3|chrNA (140342154-140342073) | |
| 72-182, gnl|dasNov1|scaffold_121232 (5058-5138) | |
| 72-182, gnl|echTel1|scaffold_288449 (90541-90622) | |
| 72-182, gnl|fr1|chrUn (157713069-157712988) | |
| 72-182, gnl|galGal2|chr10 (4927652-4927571) | |
| 72-182, gnl|hg17|chr15 (61235664-61235745) | |
| 72-182, gnl|Hg17|chr15 (61235773-61235663) | |
| 72-182, gnl|loxAfr1|scaffold_3344 (60720-60639) | |
| 72-182, gnl|mm7|chr9 (66978408-66978327) | |
| 72-182, gnl|Mm7|chr9 (66978297-66978407) | |
| 72-182, gnl|monDom2|scaffold_12 (50631747-50631666) | |
| 72-182, gnl|oryCun1|scaffold_192804 (101083-101002) | |
| 72-182, gnl|panTro1|chr16 (61692254-61692335) | |
| 72-182, gnl|rheMac2|chr7 (41529299-41529380) | |
| 72-182, gnl|rn3|chr2 (190442524-190442442) | |
| 72-182, gnl|tetNig1|chr21_random (2128755-2128674) | |
| 72-182, gnl|xenTro1|scaffold_62 (1158784-1158865) | |
| 260-499, gnl|bosTau2|chr17 (42410259-42410499) | |
| 260-499, gnl|Hg17|chr16 (57680436-57680676) | |
| 260-499, gnl|Mm7|chr3 (66070054-66069820) | |
| 290-488, gnl|bosTau2|chr10 (31050455-31050256) | |
| 290-488, gnl|Hg17|chr15 (61233314-61233105) | |
| 290-488, gnl|Mm7|chr9 (66980793-66980983) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-528, gnl|bosTau2|chr5 (70768905-70769425) | |
| 1-528, gnl|Hg17|chr16 (57680183-57680678) | |
| 1-528, gnl|Mm7|chr3 (66070288-66069812) | |
| 4-218, gnl|bosTau2|chr3 (61197133-61196917) | |
| 4-218, gnl|Hg17|chr16 (57680186-57680394) | |
| 4-218, gnl|Mm7|chr3 (66070288-66070092) | |
| 72-182, gnl|bosTau2|chr10 (31052700-31052590) | |
| 72-182, gnl|canFam2|chr30 (30748649-30748730) | |
| 72-182, gnl|danRer3|chrNA (140342154-140342073) | |
| 72-182, gnl|dasNov1|scaffold_121232 (5058-5138) | |
| 72-182, gnl|echTel1|scaffold_288449 (90541-90622) | |
| 72-182, gnl|fr1|chrUn (157713069-157712988) | |
| 72-182, gnl|galGal2|chr10 (4927652-4927571) | |
| 72-182, gnl|hg17|chr15 (61235664-61235745) | |
| 72-182, gnl|Hg17|chr15 (61235773-61235663) | |
| 72-182, gnl|loxAfr1|scaffold_3344 (60720-60639) | |
| 72-182, gnl|mm7|chr9 (66978408-66978327) | |
| 72-182, gnl|Mm7|chr9 (66978297-66978407) | |
| 72-182, gnl|monDom2|scaffold_12 (50631747-50631666) | |
| 72-182, gnl|oryCun1|scaffold_192804 (101083-101002) | |
| 72-182, gnl|panTro1|chr16 (61692254-61692335) | |
| 72-182, gnl|rheMac2|chr7 (41529299-41529380) | |
| 72-182, gnl|rn3|chr2 (190442524-190442442) | |
| 72-182, gnl|tetNig1|chr21_random (2128755-2128674) | |
| 72-182, gnl|xenTro1|scaffold_62 (1158784-1158865) | |
| 260-499, gnl|bosTau2|chr17 (42410259-42410499) | |
| 260-499, gnl|Hg17|chr16 (57680436-57680676) | |
| 260-499, gnl|Mm7|chr3 (66070054-66069820) | |
| 290-488, gnl|bosTau2|chr10 (31050455-31050256) | |
| 290-488, gnl|Hg17|chr15 (61233314-61233105) | |
| 290-488, gnl|Mm7|chr9 (66980793-66980983) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| sag (1.64444) | |
| mga (1.12144) | |
| rec (1.03842) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| fty (0.879198) | |
| csk (0.844476) | |
| aor (0.781097) | |
| cbe (0.717703) | |
| sme (0.610874) | |
| bfe (0.599431) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| sto (0.539471) | |
| lyg (0.532411) | |
| spc (0.453463) | |
| ski (0.440205) | |
| nms (0.427716) | |
| ova (0.387397) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| vin (0.332557) | |
| cag (0.302389) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ese (0.126502) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (1.64444) | |
| mga (1.12144) | |
| rec (1.03842) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| fty (0.879198) | |
| csk (0.844476) | |
| aor (0.781097) | |
| cbe (0.717703) | |
| sme (0.610874) | |
| bfe (0.599431) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| sto (0.539471) | |
| lyg (0.532411) | |
| spc (0.453463) | |
| ski (0.440205) | |
| nms (0.427716) | |
| ova (0.387397) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| vin (0.332557) | |
| cag (0.302389) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nje (0.16592) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ese (0.126502) | |
| jca (0.11396) | |
| jej (0.0989218) |