Non-Coding RNA Search

Ss1.1-rova002_h24.5

Sequence:


               
               AAATTTTTATGCTCATCATCACTGCATTAATGACATCACAGTAATCATTTTTTCATAGTT
TAGGTACCACTTTTTGCCAAAACATCGTGTCCTGTCATTGGTGTAAAATACAAAGTGCCA
AAAAAATCTTGCAAGATAGAATCCATGCATACACTCTTTCCAAAACACTGTGACCGTGTA
TGGTAGGCATTGTTATTTCCTAATGACCAAATCTCTTAGCGAATCATGTTAAATATTTTT
TTGTGTGCGTCAGTATTCTCCTTTATGACCTTCTAATAAGTGGAGTATGAAGGAAAGAGA
GGAAAAGCAACTGACCTCTGGCTCTCTGCCAAGCCAAAGCAAGTGACCTGCGGCCTGAGC
TGCCTGCCGCACGGACCTCAATGGCTGTGCTAGTATTTGGTGAGAGCCGCCAATGATGGC
TGTATTTTGTGGGCAGAAAAACGACTTGATTTTGCTTCAGCATTAGCATTCAGAAGCACC
TCTAAGTACAACAAGTGCTCTTAATTAACCTTTATTTACCCGACTCACAGCGTCCCTCCC
ATCAGCCAGCCTTCCCGGGCTGCTCCCTGACATTCCCACACACCTCTGTCCCTCCCTTGA
GTTCTCTGCTCGCACCAGACTTCTCTGCACATGCCCTGCTTCCTGTTGTCAATACACAAT
TCAACAGAAACCCTGGACATTTGGGCCTAAAAAGAAAGGGTCATTCCTGCGAAAATTACC
TTGAATGCTTTGGTAAAATCTGATAAAGGTTGCTGCTGATAAAAAACTGCTTTTAAATTA
GGTGTGCTTAGGAAAATTGTAAAATATTGGGAGAACATAAAATTCAAGAAAATTTCTGAA
CTTAGATTGCTTCACAGATTTAAGTACTCATTTCACCTTTTGAAAAATCTAGACTGATCA
TGAGGTATTCCAATGTATGTGTAATGTAATGTATGTACCACATCATATTATTGGTATGAC
TTCTGCAAGAATAGAACTGCAGTCATTAGACCCTTATGCAAAGGAAAAGCTTTATATCAA
ACATGAGCAGATGAATGTACATTTGAAGTTAGGATTCCCCACTTTACTTCCTTAAATGAC
CAACTACTGATACTGATCACAGTGGCTAATAGAGACTGTCCTAGAGTTAGAAGGTTCCAA
TTGCTTTATTACAGACTTAAAAAAAATAGGGATTTATTTAAGATGTATTAGCCAGGAGCA
TAATTAGGTATTATTTAGGCCATTTGTTTGTCCATTTAAAGATGATTTTCTTGACCTTTG
TGAGATCAACTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGTGAGTGTTGTC
AGCAAGGACACAGGTAGATAGTTCATCTGGTCTGCATCTTTACAATTAACTAAAAATGTT
TTTTCTGATTTTCCACATGATCCTTGTACCAATTTTAGCTCACCTTTGGCCCAAACCTAT
CAGAATTAACCGAAATACTCCATTTTTAAATTTTCATTTAAACCTTGGGATTAATAGGAA
GGGAAAATGTTCTCAGATCATATATCTTGGCCAATATACTACTCCCAGATCCTTTATGTA
TGACAAGCTTTTGGCCTAGAAGAGAGTGCTTATCTGTTCATGGAAGAAAGCTTTTGAGAT
GAGAGAGTGGCTTATACTTTCTTGCAGCAATTGATTTTCTGTCCTTACCATTCTATGGAT
CTTACAAAGAACCTTTATAATTTGTTGTACTGAACTGTATGATTATGTACTAAATAAAGC
TCTTTTAAGTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTTTATGCTCATCATCACTGCATTAATGACATCACAGTAATCATTTTTTCATAGTT
TAGGTACCACTTTTTGCCAAAACATCGTGTCCTGTCATTGGTGTAAAATACAAAGTGCCA
AAAAAATCTTGCAAGATAGAATCCATGCATACACTCTTTCCAAAACACTGTGACCGTGTA
TGGTAGGCATTGTTATTTCCTAATGACCAAATCTCTTAGCGAATCATGTTAAATATTTTT
TTGTGTGCGTCAGTATTCTCCTTTATGACCTTCTAATAAGTGGAGTATGAAGGAAAGAGA
GGAAAAGCAACTGACCTCTGGCTCTCTGCCAAGCCAAAGCAAGTGACCTGCGGCCTGAGC
TGCCTGCCGCACGGACCTCAATGGCTGTGCTAGTATTTGGTGAGAGCCGCCAATGATGGC
TGTATTTTGTGGGCAGAAAAACGACTTGATTTTGCTTCAGCATTAGCATTCAGAAGCACC
TCTAAGTACAACAAGTGCTCTTAATTAACCTTTATTTACCCGACTCACAGCGTCCCTCCC
ATCAGCCAGCCTTCCCGGGCTGCTCCCTGACATTCCCACACACCTCTGTCCCTCCCTTGA
GTTCTCTGCTCGCACCAGACTTCTCTGCACATGCCCTGCTTCCTGTTGTCAATACACAAT
TCAACAGAAACCCTGGACATTTGGGCCTAAAAAGAAAGGGTCATTCCTGCGAAAATTACC
TTGAATGCTTTGGTAAAATCTGATAAAGGTTGCTGCTGATAAAAAACTGCTTTTAAATTA
GGTGTGCTTAGGAAAATTGTAAAATATTGGGAGAACATAAAATTCAAGAAAATTTCTGAA
CTTAGATTGCTTCACAGATTTAAGTACTCATTTCACCTTTTGAAAAATCTAGACTGATCA
TGAGGTATTCCAATGTATGTGTAATGTAATGTATGTACCACATCATATTATTGGTATGAC
TTCTGCAAGAATAGAACTGCAGTCATTAGACCCTTATGCAAAGGAAAAGCTTTATATCAA
ACATGAGCAGATGAATGTACATTTGAAGTTAGGATTCCCCACTTTACTTCCTTAAATGAC
CAACTACTGATACTGATCACAGTGGCTAATAGAGACTGTCCTAGAGTTAGAAGGTTCCAA
TTGCTTTATTACAGACTTAAAAAAAATAGGGATTTATTTAAGATGTATTAGCCAGGAGCA
TAATTAGGTATTATTTAGGCCATTTGTTTGTCCATTTAAAGATGATTTTCTTGACCTTTG
TGAGATCAACTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGTGAGTGTTGTC
AGCAAGGACACAGGTAGATAGTTCATCTGGTCTGCATCTTTACAATTAACTAAAAATGTT
TTTTCTGATTTTCCACATGATCCTTGTACCAATTTTAGCTCACCTTTGGCCCAAACCTAT
CAGAATTAACCGAAATACTCCATTTTTAAATTTTCATTTAAACCTTGGGATTAATAGGAA
GGGAAAATGTTCTCAGATCATATATCTTGGCCAATATACTACTCCCAGATCCTTTATGTA
TGACAAGCTTTTGGCCTAGAAGAGAGTGCTTATCTGTTCATGGAAGAAAGCTTTTGAGAT
GAGAGAGTGGCTTATACTTTCTTGCAGCAATTGATTTTCTGTCCTTACCATTCTATGGAT
CTTACAAAGAACCTTTATAATTTGTTGTACTGAACTGTATGATTATGTACTAAATAAAGC
TCTTTTAAGTTAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-537, gnl|bosTau2|chr18 (35558823-35558291)
               

               
               1-537, gnl|Hg17|chr19 (37666828-37667360)
               


               
               620-917, gnl|bosTau2|chr18 (35558184-35557880)
               

               
               620-917, gnl|Hg17|chr19 (37667459-37667771)
               


               
               980-1759, gnl|bosTau2|chr18 (35557736-35556919)
               

               
               980-1759, gnl|Hg17|chr19 (37667817-37668641)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-537, gnl|bosTau2|chr18 (35558823-35558291)
               

               
               1-537, gnl|Hg17|chr19 (37666828-37667360)
               


               
               620-917, gnl|bosTau2|chr18 (35558184-35557880)
               

               
               620-917, gnl|Hg17|chr19 (37667459-37667771)
               


               
               980-1759, gnl|bosTau2|chr18 (35557736-35556919)
               

               
               980-1759, gnl|Hg17|chr19 (37667817-37668641)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               ova (0.516529)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.516529)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-537, gnl\|bosTau2\|chr18 (35558823-35558291)
	1-537, gnl\|Hg17\|chr19 (37666828-37667360)

	620-917, gnl\|bosTau2\|chr18 (35558184-35557880)
	620-917, gnl\|Hg17\|chr19 (37667459-37667771)

	980-1759, gnl\|bosTau2\|chr18 (35557736-35556919)
	980-1759, gnl\|Hg17\|chr19 (37667817-37668641)

	ova (0.516529)
	fbs (0.350693)
	vin (0.332557)
	liv (0.292569)
	spl (0.286369)
	tra (0.246184)
	ece (0.229305)
	cty (0.20816)
	tes (0.207814)
	nep (0.183925)
	ton (0.1755)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	thg (0.126791)
	pgl (0.118483)
	ebs (0.118301)