Non-Coding RNA Search

Ss1.1-rova002_i12.5

Sequence:


               
               TTTCCTTTCTGAAGAGAAGAGATGTAACAGCTTTGCAGATAAGTACCAGCCCGAGGGAGT
CAAATGGGTGAAATCATCTTTGGGCCTGACTCCAGCAAGACCAGCATCTCCAGGCTCCGG
CCTTCCTCCTTGTGCCTGAGAGTCAGGGAAAGCGTGAGACTGCCCAGAGGCCACCTCCGT
GGGTCAGCCAGACCATCTGGATCTATGGTGGGACTCCAGCTCTCCCTTACCCAAGGGGAG
GAGGTAAGGCCAGGCCTCTGGCAACGTGGAGTTGTCCGTAATGACCTTTAGAGGCCCAAG
GGCCTGTCCCCATCTCCTGACCACAAGGCCTCTGCACCCCTGTGTCATATCCCATGAGAG
AGACTTGTTCTCGTGGCATGTACCATCCCTGTGAGAGGGCGCTGTATATCATTTTGTATT
TTTTAATTCATTTTAATCTACAGGCTGGAATCTAATTTTTAAATTTCATTGGAACTCACA
TTTTAAAAAAGAAAAACATTTAAAATAATAATAATAAACCTTTGACTGGTGTCTTCCAAG
TAGTTTGATCGAAGAACTCATAGGTGTTTTCGAAACAGCCTGGAGTGTAAAGTCTGGAAG
CCATGGCCTCGCTTGTGTGTGTGAAGTGTAAATCTGGTTTTGTTTTGTTGTTTTGGATTC
TTTTGGGTTTTTGTTTCGTTTTGTTTTGAAGATCAGATAGTGATCACTCTGAAAGATTGA
AGCCAAGAATTTGTAACTATGATATTTACTGTAAGCTGTAGAACATCCAGTAACTATTAA
AAAAAAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTTTCTGAAGAGAAGAGATGTAACAGCTTTGCAGATAAGTACCAGCCCGAGGGAGT
CAAATGGGTGAAATCATCTTTGGGCCTGACTCCAGCAAGACCAGCATCTCCAGGCTCCGG
CCTTCCTCCTTGTGCCTGAGAGTCAGGGAAAGCGTGAGACTGCCCAGAGGCCACCTCCGT
GGGTCAGCCAGACCATCTGGATCTATGGTGGGACTCCAGCTCTCCCTTACCCAAGGGGAG
GAGGTAAGGCCAGGCCTCTGGCAACGTGGAGTTGTCCGTAATGACCTTTAGAGGCCCAAG
GGCCTGTCCCCATCTCCTGACCACAAGGCCTCTGCACCCCTGTGTCATATCCCATGAGAG
AGACTTGTTCTCGTGGCATGTACCATCCCTGTGAGAGGGCGCTGTATATCATTTTGTATT
TTTTAATTCATTTTAATCTACAGGCTGGAATCTAATTTTTAAATTTCATTGGAACTCACA
TTTTAAAAAAGAAAAACATTTAAAATAATAATAATAAACCTTTGACTGGTGTCTTCCAAG
TAGTTTGATCGAAGAACTCATAGGTGTTTTCGAAACAGCCTGGAGTGTAAAGTCTGGAAG
CCATGGCCTCGCTTGTGTGTGTGAAGTGTAAATCTGGTTTTGTTTTGTTGTTTTGGATTC
TTTTGGGTTTTTGTTTCGTTTTGTTTTGAAGATCAGATAGTGATCACTCTGAAAGATTGA
AGCCAAGAATTTGTAACTATGATATTTACTGTAAGCTGTAGAACATCCAGTAACTATTAA
AAAAAAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               189-348, - strand, RNAz p=0.535098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-348, - strand, RNAz p=0.535098

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-803, gnl|bosTau2|chr15 (41747342-41746539)
               

               
               1-803, gnl|Hg17|chr11 (72790306-72789485)
               

               
               1-803, gnl|Mm7|chr7 (96887098-96887891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr15 (41747342-41746539)
               

               
               1-803, gnl|Hg17|chr11 (72790306-72789485)
               

               
               1-803, gnl|Mm7|chr7 (96887098-96887891)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pro (0.512033)
               

               
               spc (0.453463)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-803, gnl\|bosTau2\|chr15 (41747342-41746539)
	1-803, gnl\|Hg17\|chr11 (72790306-72789485)
	1-803, gnl\|Mm7\|chr7 (96887098-96887891)

	pro (0.512033)
	spc (0.453463)
	fhi (0.339155)
	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)
	hea (0.204499)
	nlu (0.191681)
	fbs (0.175346)
	ova (0.129132)
	thg (0.126791)
	pgl (0.118483)
	cty (0.10408)
	eje (0.0988338)