Non-Coding RNA Search

Ss1.1-rova002_j24.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTCCTTTAACTGACAAGCCATGTTGAGTGGTCTTGGACCACT
GCTTTTCCCCTATGTGAGTCAATACATAGTGCTGCTGTGTGTGTATATTTTTGTGTGTGT
ATTTGCTAATTTTTATTAATTCTAGTTTTTCATTAAATAAATTTGACTTTCTTTTCTGTA
ATTCAGGTTTTTCCTCACTTTTTTTTGGTACCTTTTTAAAGTTAGTGTCTTTTTGATATG
CATAATTGTTTATGGTAAAGTTTATACATACATATGTGTTCAATACATATTTTCCCCCAT
TAATCAGTTCATTAGAAATATTTTAAATTCAACCATTTTGTGAAGATATGAGCTCCAGAA
AGGAAAGGTGACACCTGAAGAATTATCAGAAGCTATTTAAAGCAACTGTAAGATGGTTTT
TCTCTCTTTTTCTCCAGTTGAGTCATACCTTCAAACTACTCTTTGAAAGGTTAGGGAATA
CTGATTTTTTTAAATACTGGAAGAAAAATCAGGCTCACCCCCTCCCCCCCAAATATCTTG
GACAAATCACATATGTTTAAAATTCGTTCTTGTATTTATTGGTTTTGCAAAAGAAGGCAT
CGTCTTACACAGTATTTGTAATTAAAAGCAAATCATTTGTTTTAAAAAAAAGGCAGTTTG
CAAAAAAAAATGTTTTTGGTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTCCTTTAACTGACAAGCCATGTTGAGTGGTCTTGGACCACT
GCTTTTCCCCTATGTGAGTCAATACATAGTGCTGCTGTGTGTGTATATTTTTGTGTGTGT
ATTTGCTAATTTTTATTAATTCTAGTTTTTCATTAAATAAATTTGACTTTCTTTTCTGTA
ATTCAGGTTTTTCCTCACTTTTTTTTGGTACCTTTTTAAAGTTAGTGTCTTTTTGATATG
CATAATTGTTTATGGTAAAGTTTATACATACATATGTGTTCAATACATATTTTCCCCCAT
TAATCAGTTCATTAGAAATATTTTAAATTCAACCATTTTGTGAAGATATGAGCTCCAGAA
AGGAAAGGTGACACCTGAAGAATTATCAGAAGCTATTTAAAGCAACTGTAAGATGGTTTT
TCTCTCTTTTTCTCCAGTTGAGTCATACCTTCAAACTACTCTTTGAAAGGTTAGGGAATA
CTGATTTTTTTAAATACTGGAAGAAAAATCAGGCTCACCCCCTCCCCCCCAAATATCTTG
GACAAATCACATATGTTTAAAATTCGTTCTTGTATTTATTGGTTTTGCAAAAGAAGGCAT
CGTCTTACACAGTATTTGTAATTAAAAGCAAATCATTTGTTTTAAAAAAAAGGCAGTTTG
CAAAAAAAAATGTTTTTGGTCTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               17-684, gnl|bosTau2|chr18 (17420876-17421538)
               

               
               17-684, gnl|Hg17|chr16 (46952618-46951983)
               

               
               17-684, gnl|Mm7|chr8 (85315191-85314523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-684, gnl|bosTau2|chr18 (17420876-17421538)
               

               
               17-684, gnl|Hg17|chr16 (46952618-46951983)
               

               
               17-684, gnl|Mm7|chr8 (85315191-85314523)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fcc (0.39557)
               

               
               gul (0.355177)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               gul (0.355177)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

	17-684, gnl\|bosTau2\|chr18 (17420876-17421538)
	17-684, gnl\|Hg17\|chr16 (46952618-46951983)
	17-684, gnl\|Mm7\|chr8 (85315191-85314523)

	fcc (0.39557)
	gul (0.355177)
	bfe (0.299715)
	mgp (0.230681)
	ecc (0.23007)
	hea (0.204499)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	ova (0.129132)
	ldo (0.0970026)