Non-Coding RNA Search

Ss1.1-rova002_o20.5

Sequence:


               
               GATTACACTGAGGAGAAACCCTATGAATGTAAACAATGTGGTAAGGCCTTCAGTTACTAC
AATTCCTTACAGTCACACAAAAGAACTCATACTGGAGAGAAACCCTTTGAATGCAAGGAA
TGTGGGAAAGCTCTCTCCCATCACCAAACCTTAAAAATACACATGAGACTGCACACTGGA
GAGAAACCCTACGAATGTAAACAGTGTGGTAGAGCCTTCAGTCACTACAATTGCTTAGAG
TCACACAGAAGAGCTCACACTGGAGAGAAACCCTATGAATGCAAGGAATGTGGGAAAGCC
CTCTCCCACCACCAAACCTTAAAAGTACACATGAGATTGCACACTGGAGAGGAACCCTAT
GAATGTGAACAGTGTGGTAGAGCCTTCAGATATTACACGTCTTTCCAAACACACAAAAGA
GTTCATGCTGAGAAGAAATTCTGTGAATAAGGAGTATGGAAAAGCCCTTAGTTGGTCAAC
TTCACTGTGAAAACGTGAAAGAGTCCACACTGGAGAGAAAGCCTATCAGTGTAAACAAGG
AAAAGGCCTCAGATATTTTCAAAGTTTGCAAGCACATGAAAGGACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTACACTGAGGAGAAACCCTATGAATGTAAACAATGTGGTAAGGCCTTCAGTTACTAC
AATTCCTTACAGTCACACAAAAGAACTCATACTGGAGAGAAACCCTTTGAATGCAAGGAA
TGTGGGAAAGCTCTCTCCCATCACCAAACCTTAAAAATACACATGAGACTGCACACTGGA
GAGAAACCCTACGAATGTAAACAGTGTGGTAGAGCCTTCAGTCACTACAATTGCTTAGAG
TCACACAGAAGAGCTCACACTGGAGAGAAACCCTATGAATGCAAGGAATGTGGGAAAGCC
CTCTCCCACCACCAAACCTTAAAAGTACACATGAGATTGCACACTGGAGAGGAACCCTAT
GAATGTGAACAGTGTGGTAGAGCCTTCAGATATTACACGTCTTTCCAAACACACAAAAGA
GTTCATGCTGAGAAGAAATTCTGTGAATAAGGAGTATGGAAAAGCCCTTAGTTGGTCAAC
TTCACTGTGAAAACGTGAAAGAGTCCACACTGGAGAGAAAGCCTATCAGTGTAAACAAGG
AAAAGGCCTCAGATATTTTCAAAGTTTGCAAGCACATGAAAGGACTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51764156|ref|XP_486116.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51764156|ref|XP_486116.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-587, gnl|bosTau2|chr11 (74555111-74554526)
               

               
               6-587, gnl|Hg17|chr9 (127286095-127286680)
               

               
               6-587, gnl|Mm7|chr11 (62796287-62795728)
               


               
               7-547, gnl|bosTau2|chr10 (8996600-8996056)
               

               
               7-547, gnl|Hg17|chr19 (42818405-42817777)
               

               
               7-547, gnl|Mm7|chr2 (127310031-127309571)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-587, gnl|bosTau2|chr11 (74555111-74554526)
               

               
               6-587, gnl|Hg17|chr9 (127286095-127286680)
               

               
               6-587, gnl|Mm7|chr11 (62796287-62795728)
               


               
               7-547, gnl|bosTau2|chr10 (8996600-8996056)
               

               
               7-547, gnl|Hg17|chr19 (42818405-42817777)
               

               
               7-547, gnl|Mm7|chr2 (127310031-127309571)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	6-587, gnl\|bosTau2\|chr11 (74555111-74554526)
	6-587, gnl\|Hg17\|chr9 (127286095-127286680)
	6-587, gnl\|Mm7\|chr11 (62796287-62795728)

	7-547, gnl\|bosTau2\|chr10 (8996600-8996056)
	7-547, gnl\|Hg17\|chr19 (42818405-42817777)
	7-547, gnl\|Mm7\|chr2 (127310031-127309571)