Ss1.1-rova002_o21.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AAAATAAAATAAAACATTCACCTAACATTAAAGTATAGGAGATAGAAATTTTTATCCTGA CGCTATAGAGATAGTACCGTAAGGGAAAGATGAAAGAATAAAAAAAAAAAAAAAAAACTC TGTAGATCTAACTGCTGTATGTAGAAGACACCACCTGTAGGAGCTGGAAGGGATCATGCT TCTCACATTGTAAAGCATTGGCCTAGGAAGGTGAAAAAGTTGTCTTTTTGAAGGATTTTT TTTTTTTTCTGCTGGTTCTTTGGGTTTTGAGTTGGTATTTTTAAGCTCCCTGGTTGAGTG TGTTGTCTTTGTTTTTGAGATCTACTGTATGTGTTGAATAACAAGCTATTTCCATTGTAC TGTGCATTTTCCCATTAAATGGTTTGCTTTTAATATTCATACAATGTTAAATATGAGGTG ACCGTAAAATAGTTAGGAGTTTCTTTACTTACAAAAATCACTGGAAATGATTAAATGGCT TTTCCCTTTCCCCCAAGGTGCATTTTTCTTTCCATATAGTAAAGTTGAGCTTCTACAGTG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AAAATAAAATAAAACATTCACCTAACATTAAAGTATAGGAGATAGAAATTTTTATCCTGA CGCTATAGAGATAGTACCGTAAGGGAAAGATGAAAGAATAAAAAAAAAAAAAAAAAACTC TGTAGATCTAACTGCTGTATGTAGAAGACACCACCTGTAGGAGCTGGAAGGGATCATGCT TCTCACATTGTAAAGCATTGGCCTAGGAAGGTGAAAAAGTTGTCTTTTTGAAGGATTTTT TTTTTTTTCTGCTGGTTCTTTGGGTTTTGAGTTGGTATTTTTAAGCTCCCTGGTTGAGTG TGTTGTCTTTGTTTTTGAGATCTACTGTATGTGTTGAATAACAAGCTATTTCCATTGTAC TGTGCATTTTCCCATTAAATGGTTTGCTTTTAATATTCATACAATGTTAAATATGAGGTG ACCGTAAAATAGTTAGGAGTTTCTTTACTTACAAAAATCACTGGAAATGATTAAATGGCT TTTCCCTTTCCCCCAAGGTGCATTTTTCTTTCCATATAGTAAAGTTGAGCTTCTACAGTG |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
8-112, - strand, RNAz p=0.779286 | |
426-540, - strand, RNAz p=0.656955 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
8-112, - strand, RNAz p=0.779286 | |
426-540, - strand, RNAz p=0.656955 |
Aligned organism(s): 140 entry(ies) | More info |
Aligned organism(s): 140 entry(ies) | Help | Less info |
3-117, gnl|bosTau2|chrM (1500-1614) | |
3-117, gnl|canFam2|chr16 (26407395-26407649) | |
3-117, gnl|canFam2|chrM (1582-1167) | |
3-117, gnl|canFam2|chrM (971-1228) | |
3-117, gnl|canFam2|chrM (867-1229) | |
3-117, gnl|canFam2|chrM (1258-855) | |
3-117, gnl|canFam2|chrM (867-1229) | |
3-117, gnl|canFam2|chrM (867-1231) | |
3-117, gnl|canFam2|chrM (971-1228) | |
3-117, gnl|canFam2|chrM (887-1229) | |
3-117, gnl|danRer3|chrM (1962-2202) | |
3-117, gnl|danRer3|chrM (2599-2137) | |
3-117, gnl|danRer3|chrM (1914-2201) | |
3-117, gnl|danRer3|chrM (1818-2204) | |
3-117, gnl|danRer3|chrM (2242-1806) | |
3-117, gnl|danRer3|chrM (1818-2202) | |
3-117, gnl|danRer3|chrM (1818-2215) | |
3-117, gnl|danRer3|chrM (1914-2201) | |
3-117, gnl|danRer3|chrM (1838-2202) | |
3-117, gnl|dasNov1|scaffold_23239 (12149-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (11575-11994) | |
3-117, gnl|dasNov1|scaffold_23239 (12197-11932) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (11902-12316) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11929) | |
3-117, gnl|dasNov1|scaffold_23239 (12197-11932) | |
3-117, gnl|dasNov1|scaffold_23239 (12284-11931) | |
3-117, gnl|echTel1|scaffold_181343 (848-432) | |
3-117, gnl|echTel1|scaffold_181343 (229-496) | |
3-117, gnl|echTel1|scaffold_181343 (229-496) | |
3-117, gnl|echTel1|scaffold_181343 (152-497) | |
3-117, gnl|echTel1|scaffold_49882 (5889-5675) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5675) | |
3-117, gnl|echTel1|scaffold_49882 (5645-6056) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5675) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5674) | |
3-117, gnl|galGal2|chrM (2266-2502) | |
3-117, gnl|galGal2|chrM (2875-2434) | |
3-117, gnl|galGal2|chrM (2217-2501) | |
3-117, gnl|galGal2|chrM (2112-2502) | |
3-117, gnl|galGal2|chrM (2537-2100) | |
3-117, gnl|galGal2|chrM (2112-2502) | |
3-117, gnl|galGal2|chrM (2112-2504) | |
3-117, gnl|galGal2|chrM (2217-2501) | |
3-117, gnl|galGal2|chrM (2138-2502) | |
3-117, gnl|hg17|chr1 (94114925-94115319) | |
3-117, gnl|hg17|chr10 (57028476-57028846) | |
3-117, gnl|hg17|chr17 (21946458-21946685) | |
3-117, gnl|hg17|chr17 (19443330-19443696) | |
3-117, gnl|hg17|chr2 (140814247-140814655) | |
3-117, gnl|hg17|chr2 (117495860-117496222) | |
3-117, gnl|hg17|chr8 (32989468-32989682) | |
3-117, gnl|hg17|chr9 (5082273-5082613) | |
3-117, gnl|hg17|chrM (1547-1806) | |
3-117, gnl|Hg17|chrM (1716-1825) | |
3-117, gnl|loxAfr1|scaffold_36650 (4031-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (4595-4180) | |
3-117, gnl|loxAfr1|scaffold_36650 (3975-4242) | |
3-117, gnl|loxAfr1|scaffold_36650 (3881-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (4272-3869) | |
3-117, gnl|loxAfr1|scaffold_36650 (3881-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (3975-4242) | |
3-117, gnl|loxAfr1|scaffold_36650 (3901-4243) | |
3-117, gnl|loxAfr1|scaffold_9488 (57003-56640) | |
3-117, gnl|mm7|chrM (1017-1233) | |
3-117, gnl|mm7|chrM (1585-1167) | |
3-117, gnl|mm7|chrM (969-1232) | |
3-117, gnl|mm7|chrM (867-1233) | |
3-117, gnl|mm7|chrM (1262-855) | |
3-117, gnl|mm7|chrM (867-1233) | |
3-117, gnl|mm7|chrM (867-1235) | |
3-117, gnl|mm7|chrM (969-1232) | |
3-117, gnl|mm7|chrM (887-1233) | |
3-117, gnl|Mm7|chrM (1138-1251) | |
3-117, gnl|monDom2|scaffold_1308 (10719-10358) | |
3-117, gnl|monDom2|scaffold_298 (185076-185501) | |
3-117, gnl|monDom2|scaffold_298 (168682-168324) | |
3-117, gnl|monDom2|scaffold_315 (26688-26426) | |
3-117, gnl|monDom2|scaffold_315 (26395-26795) | |
3-117, gnl|monDom2|scaffold_485 (10019-10378) | |
3-117, gnl|monDom2|scaffold_486 (17934-17718) | |
3-117, gnl|monDom2|scaffold_503 (21967-22229) | |
3-117, gnl|monDom2|scaffold_503 (21892-22231) | |
3-117, gnl|oryCun1|scaffold_140182 (1692-1277) | |
3-117, gnl|oryCun1|scaffold_140182 (1080-1340) | |
3-117, gnl|oryCun1|scaffold_140182 (18654-19026) | |
3-117, gnl|oryCun1|scaffold_140182 (1080-1340) | |
3-117, gnl|oryCun1|scaffold_140182 (997-1341) | |
3-117, gnl|oryCun1|scaffold_206071 (191795-192008) | |
3-117, gnl|oryCun1|scaffold_206071 (191646-192008) | |
3-117, gnl|oryCun1|scaffold_206071 (192037-191634) | |
3-117, gnl|oryCun1|scaffold_206071 (191646-192008) | |
3-117, gnl|panTro1|chr1 (93098738-93099133) | |
3-117, gnl|panTro1|chr11_random (23984840-23984500) | |
3-117, gnl|panTro1|chr13 (29841746-29842153) | |
3-117, gnl|panTro1|chr13 (3554134-3554496) | |
3-117, gnl|panTro1|chr19 (19773472-19773838) | |
3-117, gnl|panTro1|chr3 (174198955-174198693) | |
3-117, gnl|panTro1|chr7 (34137492-34137706) | |
3-117, gnl|panTro1|chr8 (57891990-57892255) | |
3-117, gnl|panTro1|chr8 (57891887-57892258) | |
3-117, gnl|rheMac2|chr13 (123216166-123216528) | |
3-117, gnl|rheMac2|chr13 (123216557-123216154) | |
3-117, gnl|rheMac2|chr13 (123216166-123216528) | |
3-117, gnl|rheMac2|chr15 (72119710-72120126) | |
3-117, gnl|rheMac2|chr15 (72120390-72120063) | |
3-117, gnl|rheMac2|chr5 (147650315-147650052) | |
3-117, gnl|rheMac2|chr8 (33307297-33307511) | |
3-117, gnl|rheMac2|chr9 (81715333-81715068) | |
3-117, gnl|rheMac2|chr9 (81715432-81715065) | |
3-117, gnl|rn3|chr7 (94220142-94219939) | |
3-117, gnl|rn3|chr7 (94220190-94219940) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94219910-94220329) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94220190-94219940) | |
3-117, gnl|rn3|chr7 (94220304-94219939) | |
3-117, gnl|tetNig1|chrUn_random (103510762-103510999) | |
3-117, gnl|tetNig1|chrUn_random (103511387-103510937) | |
3-117, gnl|tetNig1|chrUn_random (103510713-103510998) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103511001) | |
3-117, gnl|tetNig1|chrUn_random (103511040-103510606) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103510999) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103511012) | |
3-117, gnl|tetNig1|chrUn_random (103510713-103510998) | |
3-117, gnl|tetNig1|chrUn_random (103510639-103510999) | |
3-117, gnl|xenTro1|scaffold_21980 (150-369) | |
3-117, gnl|xenTro1|scaffold_21980 (733-307) | |
3-117, gnl|xenTro1|scaffold_21980 (101-368) | |
3-117, gnl|xenTro1|scaffold_21980 (8-369) | |
3-117, gnl|xenTro1|scaffold_21980 (408-8) | |
3-117, gnl|xenTro1|scaffold_21980 (8-369) | |
3-117, gnl|xenTro1|scaffold_21980 (8-371) | |
3-117, gnl|xenTro1|scaffold_21980 (101-368) | |
3-117, gnl|xenTro1|scaffold_21980 (27-369) | |
123-540, gnl|bosTau2|chr7 (29551623-29551208) | |
123-540, gnl|Hg17|chr5 (139476669-139477078) | |
123-540, gnl|Mm7|chr18 (36666002-36666418) |
Aligned organism(s): 140 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
3-117, gnl|bosTau2|chrM (1500-1614) | |
3-117, gnl|canFam2|chr16 (26407395-26407649) | |
3-117, gnl|canFam2|chrM (1582-1167) | |
3-117, gnl|canFam2|chrM (971-1228) | |
3-117, gnl|canFam2|chrM (867-1229) | |
3-117, gnl|canFam2|chrM (1258-855) | |
3-117, gnl|canFam2|chrM (867-1229) | |
3-117, gnl|canFam2|chrM (867-1231) | |
3-117, gnl|canFam2|chrM (971-1228) | |
3-117, gnl|canFam2|chrM (887-1229) | |
3-117, gnl|danRer3|chrM (1962-2202) | |
3-117, gnl|danRer3|chrM (2599-2137) | |
3-117, gnl|danRer3|chrM (1914-2201) | |
3-117, gnl|danRer3|chrM (1818-2204) | |
3-117, gnl|danRer3|chrM (2242-1806) | |
3-117, gnl|danRer3|chrM (1818-2202) | |
3-117, gnl|danRer3|chrM (1818-2215) | |
3-117, gnl|danRer3|chrM (1914-2201) | |
3-117, gnl|danRer3|chrM (1838-2202) | |
3-117, gnl|dasNov1|scaffold_23239 (12149-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (11575-11994) | |
3-117, gnl|dasNov1|scaffold_23239 (12197-11932) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (11902-12316) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11931) | |
3-117, gnl|dasNov1|scaffold_23239 (12304-11929) | |
3-117, gnl|dasNov1|scaffold_23239 (12197-11932) | |
3-117, gnl|dasNov1|scaffold_23239 (12284-11931) | |
3-117, gnl|echTel1|scaffold_181343 (848-432) | |
3-117, gnl|echTel1|scaffold_181343 (229-496) | |
3-117, gnl|echTel1|scaffold_181343 (229-496) | |
3-117, gnl|echTel1|scaffold_181343 (152-497) | |
3-117, gnl|echTel1|scaffold_49882 (5889-5675) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5675) | |
3-117, gnl|echTel1|scaffold_49882 (5645-6056) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5675) | |
3-117, gnl|echTel1|scaffold_49882 (6044-5674) | |
3-117, gnl|galGal2|chrM (2266-2502) | |
3-117, gnl|galGal2|chrM (2875-2434) | |
3-117, gnl|galGal2|chrM (2217-2501) | |
3-117, gnl|galGal2|chrM (2112-2502) | |
3-117, gnl|galGal2|chrM (2537-2100) | |
3-117, gnl|galGal2|chrM (2112-2502) | |
3-117, gnl|galGal2|chrM (2112-2504) | |
3-117, gnl|galGal2|chrM (2217-2501) | |
3-117, gnl|galGal2|chrM (2138-2502) | |
3-117, gnl|hg17|chr1 (94114925-94115319) | |
3-117, gnl|hg17|chr10 (57028476-57028846) | |
3-117, gnl|hg17|chr17 (21946458-21946685) | |
3-117, gnl|hg17|chr17 (19443330-19443696) | |
3-117, gnl|hg17|chr2 (140814247-140814655) | |
3-117, gnl|hg17|chr2 (117495860-117496222) | |
3-117, gnl|hg17|chr8 (32989468-32989682) | |
3-117, gnl|hg17|chr9 (5082273-5082613) | |
3-117, gnl|hg17|chrM (1547-1806) | |
3-117, gnl|Hg17|chrM (1716-1825) | |
3-117, gnl|loxAfr1|scaffold_36650 (4031-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (4595-4180) | |
3-117, gnl|loxAfr1|scaffold_36650 (3975-4242) | |
3-117, gnl|loxAfr1|scaffold_36650 (3881-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (4272-3869) | |
3-117, gnl|loxAfr1|scaffold_36650 (3881-4243) | |
3-117, gnl|loxAfr1|scaffold_36650 (3975-4242) | |
3-117, gnl|loxAfr1|scaffold_36650 (3901-4243) | |
3-117, gnl|loxAfr1|scaffold_9488 (57003-56640) | |
3-117, gnl|mm7|chrM (1017-1233) | |
3-117, gnl|mm7|chrM (1585-1167) | |
3-117, gnl|mm7|chrM (969-1232) | |
3-117, gnl|mm7|chrM (867-1233) | |
3-117, gnl|mm7|chrM (1262-855) | |
3-117, gnl|mm7|chrM (867-1233) | |
3-117, gnl|mm7|chrM (867-1235) | |
3-117, gnl|mm7|chrM (969-1232) | |
3-117, gnl|mm7|chrM (887-1233) | |
3-117, gnl|Mm7|chrM (1138-1251) | |
3-117, gnl|monDom2|scaffold_1308 (10719-10358) | |
3-117, gnl|monDom2|scaffold_298 (185076-185501) | |
3-117, gnl|monDom2|scaffold_298 (168682-168324) | |
3-117, gnl|monDom2|scaffold_315 (26688-26426) | |
3-117, gnl|monDom2|scaffold_315 (26395-26795) | |
3-117, gnl|monDom2|scaffold_485 (10019-10378) | |
3-117, gnl|monDom2|scaffold_486 (17934-17718) | |
3-117, gnl|monDom2|scaffold_503 (21967-22229) | |
3-117, gnl|monDom2|scaffold_503 (21892-22231) | |
3-117, gnl|oryCun1|scaffold_140182 (1692-1277) | |
3-117, gnl|oryCun1|scaffold_140182 (1080-1340) | |
3-117, gnl|oryCun1|scaffold_140182 (18654-19026) | |
3-117, gnl|oryCun1|scaffold_140182 (1080-1340) | |
3-117, gnl|oryCun1|scaffold_140182 (997-1341) | |
3-117, gnl|oryCun1|scaffold_206071 (191795-192008) | |
3-117, gnl|oryCun1|scaffold_206071 (191646-192008) | |
3-117, gnl|oryCun1|scaffold_206071 (192037-191634) | |
3-117, gnl|oryCun1|scaffold_206071 (191646-192008) | |
3-117, gnl|panTro1|chr1 (93098738-93099133) | |
3-117, gnl|panTro1|chr11_random (23984840-23984500) | |
3-117, gnl|panTro1|chr13 (29841746-29842153) | |
3-117, gnl|panTro1|chr13 (3554134-3554496) | |
3-117, gnl|panTro1|chr19 (19773472-19773838) | |
3-117, gnl|panTro1|chr3 (174198955-174198693) | |
3-117, gnl|panTro1|chr7 (34137492-34137706) | |
3-117, gnl|panTro1|chr8 (57891990-57892255) | |
3-117, gnl|panTro1|chr8 (57891887-57892258) | |
3-117, gnl|rheMac2|chr13 (123216166-123216528) | |
3-117, gnl|rheMac2|chr13 (123216557-123216154) | |
3-117, gnl|rheMac2|chr13 (123216166-123216528) | |
3-117, gnl|rheMac2|chr15 (72119710-72120126) | |
3-117, gnl|rheMac2|chr15 (72120390-72120063) | |
3-117, gnl|rheMac2|chr5 (147650315-147650052) | |
3-117, gnl|rheMac2|chr8 (33307297-33307511) | |
3-117, gnl|rheMac2|chr9 (81715333-81715068) | |
3-117, gnl|rheMac2|chr9 (81715432-81715065) | |
3-117, gnl|rn3|chr7 (94220142-94219939) | |
3-117, gnl|rn3|chr7 (94220190-94219940) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94219910-94220329) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94220324-94219939) | |
3-117, gnl|rn3|chr7 (94220190-94219940) | |
3-117, gnl|rn3|chr7 (94220304-94219939) | |
3-117, gnl|tetNig1|chrUn_random (103510762-103510999) | |
3-117, gnl|tetNig1|chrUn_random (103511387-103510937) | |
3-117, gnl|tetNig1|chrUn_random (103510713-103510998) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103511001) | |
3-117, gnl|tetNig1|chrUn_random (103511040-103510606) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103510999) | |
3-117, gnl|tetNig1|chrUn_random (103510619-103511012) | |
3-117, gnl|tetNig1|chrUn_random (103510713-103510998) | |
3-117, gnl|tetNig1|chrUn_random (103510639-103510999) | |
3-117, gnl|xenTro1|scaffold_21980 (150-369) | |
3-117, gnl|xenTro1|scaffold_21980 (733-307) | |
3-117, gnl|xenTro1|scaffold_21980 (101-368) | |
3-117, gnl|xenTro1|scaffold_21980 (8-369) | |
3-117, gnl|xenTro1|scaffold_21980 (408-8) | |
3-117, gnl|xenTro1|scaffold_21980 (8-369) | |
3-117, gnl|xenTro1|scaffold_21980 (8-371) | |
3-117, gnl|xenTro1|scaffold_21980 (101-368) | |
3-117, gnl|xenTro1|scaffold_21980 (27-369) | |
123-540, gnl|bosTau2|chr7 (29551623-29551208) | |
123-540, gnl|Hg17|chr5 (139476669-139477078) | |
123-540, gnl|Mm7|chr18 (36666002-36666418) |
Expressed library(ies): 2 entry(ies) | More info |
Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nje (0.16592) | |
ova (0.129132) |