Non-Coding RNA Search

Ss1.1-rova003_g1.5

Sequence:


               
               CACTCACACACCAACCTTATATTTGGACTTCAAATTGGACCAAGGAGCAAAGCATTCCCA
GCCTATTCCTAAAGGGTGGACAAGCTTCATTTATACCATATCTGGAAATGTATATATTGG
GCCTGATAATGCGCAGCAAAAAATAGAACCTCATCACACAGCCGTGCTGGGAGAAGGTGA
CAGTGTCCAGGTGGAGAACAAGGACCCTGAGAGAAGCCACTTCGTCCTGATTGCCGGAGA
GCCATTAAAAGAACCAGTTGTCCAACATGGTCCATTTGTGATGAACACAGATGAAGAGAT
TTCTCAGGCCATTCTTGATTTCAGAAATGCGAAAAATGGCTTTGAAAGAGCCAAAACCTG
GAAATCAAAGATTGGAAACCAGTGACAAGCACGAGGGCAGGTCTGGCTGCCTTCTAGAAT
TTTGCCATTTGTGGCATCCACCCATTCGACACGTCCAATTTTCAAAGCTGGCTTCGCCAG
TGCTTCTCAAGAATTTCACTCTAAAGTGATGATATGATTTCTATAGCAATGTATGTGAGC
TATTTCCTGGCACAAGCAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCACACACCAACCTTATATTTGGACTTCAAATTGGACCAAGGAGCAAAGCATTCCCA
GCCTATTCCTAAAGGGTGGACAAGCTTCATTTATACCATATCTGGAAATGTATATATTGG
GCCTGATAATGCGCAGCAAAAAATAGAACCTCATCACACAGCCGTGCTGGGAGAAGGTGA
CAGTGTCCAGGTGGAGAACAAGGACCCTGAGAGAAGCCACTTCGTCCTGATTGCCGGAGA
GCCATTAAAAGAACCAGTTGTCCAACATGGTCCATTTGTGATGAACACAGATGAAGAGAT
TTCTCAGGCCATTCTTGATTTCAGAAATGCGAAAAATGGCTTTGAAAGAGCCAAAACCTG
GAAATCAAAGATTGGAAACCAGTGACAAGCACGAGGGCAGGTCTGGCTGCCTTCTAGAAT
TTTGCCATTTGTGGCATCCACCCATTCGACACGTCCAATTTTCAAAGCTGGCTTCGCCAG
TGCTTCTCAAGAATTTCACTCTAAAGTGATGATATGATTTCTATAGCAATGTATGTGAGC
TATTTCCTGGCACAAGCAAATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866768|ref|XP_613167.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866768|ref|XP_613167.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               6-270, gnl|bosTau2|chr1 (40108921-40108658)
               


               
               295-564, gnl|bosTau2|chr1 (40107958-40107688)
               

               
               295-564, gnl|Hg17|chrX (15162946-15162601)
               

               
               295-564, gnl|Mm7|chrX (159146764-159147295)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-270, gnl|bosTau2|chr1 (40108921-40108658)
               


               
               295-564, gnl|bosTau2|chr1 (40107958-40107688)
               

               
               295-564, gnl|Hg17|chrX (15162946-15162601)
               

               
               295-564, gnl|Mm7|chrX (159146764-159147295)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

	6-270, gnl\|bosTau2\|chr1 (40108921-40108658)

	295-564, gnl\|bosTau2\|chr1 (40107958-40107688)
	295-564, gnl\|Hg17\|chrX (15162946-15162601)
	295-564, gnl\|Mm7\|chrX (159146764-159147295)