Non-Coding RNA Search

Ss1.1-rova004_c6.5

Sequence:


               
               CTGAGCAAGGTCAGGGATTGAACCTGCAATCTCATGGTTCCTAGTCAGATTCATTAACCA
CTGCACCACGACGGGAACTCCTTGAGACTAATTCTTACCTATATGTTGGTCAACTTGGGG
GTGTTATTTTTGCATGTCATCACATCCATTTTTAAGCCATTGAATTTTATTTCCACCACT
GGTTTCCAAGTCAATCACTTGGTACTTAATAAAAGTAAGTTTCTAAGTATACCAACAGCT
TCTAAAATAATGAGTCAGCCTTTTTAGAGATGAGGAACCCTTTCAAAACACTCATTACTT
CTTCAAAGTTGAACTATCTGAATGAAATGTAGATTTTAGCCCTGTCTAGCATTCATTTTG
TCACTCCACTAGGAATTTGTAAGCATACTTTTTCAGGTTAATATTAGCTAGTCAGCCTTG
TCACATTTTTATTGATAAATTTGATCTATCATTCCTTTCTCCTGTTATTCTTTTTTTCCC
TAAAGAACATCGATATATTGAACTCTTTTTGAATTCAACTCCTGGAGGCGGTTCCGGAAT
GGGAGGTTCTGGAATGGGAGGCTATGGCAGAGATGGAATGGGTACGTAAAGTTCTTTAAG
CTGAGTTAGACACTTAGCAGCAGTCAGTTGCAAACTTTTTTCTTTTTTCCTTCTTTTAAA
GATAATCAGGGAGGCTATGGATCGGTTGGAAGAATGGGAATGGGGAACAATTATAGTGGA
GGATATGGTACTCCTGATGGTTTGGGTGGTTATGGTAAGTGTCTTTGGTTATGCTGGTTC
AGTTTGTGTTAAGTCGCCGTATGTGGTGCAATTTAAAGTTTGTGTTAAGTCGCCGTATGT
GGTGCAATTTAAAGTATGTGTTATTTTTAACATCATACACATTTTTATCCAGCTTAACAG
TTCTTAATGTCTTTTTTTTTTTCCTAAGGCCGTGGTGGTGGAGGTAGGGGCGGTTACTAT
GGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGCATGTACTAAAGCATAACAACCAAC
ATAAAAGTCCTGGCAACAGCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGCAAGGTCAGGGATTGAACCTGCAATCTCATGGTTCCTAGTCAGATTCATTAACCA
CTGCACCACGACGGGAACTCCTTGAGACTAATTCTTACCTATATGTTGGTCAACTTGGGG
GTGTTATTTTTGCATGTCATCACATCCATTTTTAAGCCATTGAATTTTATTTCCACCACT
GGTTTCCAAGTCAATCACTTGGTACTTAATAAAAGTAAGTTTCTAAGTATACCAACAGCT
TCTAAAATAATGAGTCAGCCTTTTTAGAGATGAGGAACCCTTTCAAAACACTCATTACTT
CTTCAAAGTTGAACTATCTGAATGAAATGTAGATTTTAGCCCTGTCTAGCATTCATTTTG
TCACTCCACTAGGAATTTGTAAGCATACTTTTTCAGGTTAATATTAGCTAGTCAGCCTTG
TCACATTTTTATTGATAAATTTGATCTATCATTCCTTTCTCCTGTTATTCTTTTTTTCCC
TAAAGAACATCGATATATTGAACTCTTTTTGAATTCAACTCCTGGAGGCGGTTCCGGAAT
GGGAGGTTCTGGAATGGGAGGCTATGGCAGAGATGGAATGGGTACGTAAAGTTCTTTAAG
CTGAGTTAGACACTTAGCAGCAGTCAGTTGCAAACTTTTTTCTTTTTTCCTTCTTTTAAA
GATAATCAGGGAGGCTATGGATCGGTTGGAAGAATGGGAATGGGGAACAATTATAGTGGA
GGATATGGTACTCCTGATGGTTTGGGTGGTTATGGTAAGTGTCTTTGGTTATGCTGGTTC
AGTTTGTGTTAAGTCGCCGTATGTGGTGCAATTTAAAGTTTGTGTTAAGTCGCCGTATGT
GGTGCAATTTAAAGTATGTGTTATTTTTAACATCATACACATTTTTATCCAGCTTAACAG
TTCTTAATGTCTTTTTTTTTTTCCTAAGGCCGTGGTGGTGGAGGTAGGGGCGGTTACTAT
GGGCAAGGTGGCATGAGTGGAGGTGGATGGCGTGGCATGTACTAAAGCATAACAACCAAC
ATAAAAGTCCTGGCAACAGCATCT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               227-1044, gnl|bosTau2|chr28 (16945840-16945045)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-1044, gnl|bosTau2|chr28 (16945840-16945045)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ova (0.258264)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               pgl (0.118483)
               

               
               med (0.116252)