Non-Coding RNA Search

Ss1.1-rova005_f22.5

Sequence:


               
               GCTTACTTACACTGGGGCTGTGCGTGGGGACCTATCAGTGAACTGCTGACCAGATTGGCT
CTGAGATGCTTCTGACCTAACCACCACTCCCACCTCTCCAATCACCACCCCGTTTCTTGA
AAGTAGAACAAGGTAGATCTACTTTCCAGTGAAGTGCTATCTTCTTGGGAGCCTGTGTGC
TTTCCTTAGAAGCGGAACAAAAACCCGCAGCAGGGCCGGGGTAGGACTGCTCTCTTTGCT
TAGTTTGTCCTGCTTTACATCACTTTGTCTGGATGAGTCCTGAGTTCAAATCAGGACATT
CTCCAAGGAAGATAAAGGTGATCTTCCTACTGTGAACATGAGATTTGCCTAAACCTTCCC
TCTGCTTCCATAGGGTTGCCCACATGTTGGTTCATTTCTAAGCTTTATCATGGAAAAAGC
TCTGGGGTTTCTATTTCATCTAACAAATTATGCTCCCCAGCACCTCTTCTCAACTCAGCA
CTTCTGAGGACACAGATAGTGATCAGAAGGTCTTGTAGAGAAAGCGACTGGTACAAACTG
AATGACCTTTTTGTTAGCCTGGAGGCGATTTCTGCAAACACACTTTTGAAGGTAATTCAG
TTTAATCAAGAGATGATTCCTCATTAAAGCCAAAATGTTAAATTACATGGGATGGCTAAT
AAACTTTTGATTCCTTTGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTACTTACACTGGGGCTGTGCGTGGGGACCTATCAGTGAACTGCTGACCAGATTGGCT
CTGAGATGCTTCTGACCTAACCACCACTCCCACCTCTCCAATCACCACCCCGTTTCTTGA
AAGTAGAACAAGGTAGATCTACTTTCCAGTGAAGTGCTATCTTCTTGGGAGCCTGTGTGC
TTTCCTTAGAAGCGGAACAAAAACCCGCAGCAGGGCCGGGGTAGGACTGCTCTCTTTGCT
TAGTTTGTCCTGCTTTACATCACTTTGTCTGGATGAGTCCTGAGTTCAAATCAGGACATT
CTCCAAGGAAGATAAAGGTGATCTTCCTACTGTGAACATGAGATTTGCCTAAACCTTCCC
TCTGCTTCCATAGGGTTGCCCACATGTTGGTTCATTTCTAAGCTTTATCATGGAAAAAGC
TCTGGGGTTTCTATTTCATCTAACAAATTATGCTCCCCAGCACCTCTTCTCAACTCAGCA
CTTCTGAGGACACAGATAGTGATCAGAAGGTCTTGTAGAGAAAGCGACTGGTACAAACTG
AATGACCTTTTTGTTAGCCTGGAGGCGATTTCTGCAAACACACTTTTGAAGGTAATTCAG
TTTAATCAAGAGATGATTCCTCATTAAAGCCAAAATGTTAAATTACATGGGATGGCTAAT
AAACTTTTGATTCCTTTGTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-327, + strand, RNAz p=0.986202

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-327, + strand, RNAz p=0.986202

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-680, gnl|bosTau2|chr26 (17506234-17506915)
               

               
               3-680, gnl|Hg17|chr10 (104834022-104834713)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-680, gnl|bosTau2|chr26 (17506234-17506915)
               

               
               3-680, gnl|Hg17|chr10 (104834022-104834713)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	3-680, gnl\|bosTau2\|chr26 (17506234-17506915)
	3-680, gnl\|Hg17\|chr10 (104834022-104834713)