Non-Coding RNA Search

Ss1.1-rova005_o12.5

Sequence:


               
               TCTAGAGTAAAATCTGAAAGAATACACTGTACTATGTGAGTCATACAAATACATTCAATC
TTTAATTTCTAGTGTCTGTTTCTACTAACAAAGATTTTAAAGTAAATTCACAAAAATGCA
GCTTTCCCCATTATTTGAAAAGATTAAGGAAGAGAGTAGCTTTAGGGAAGAAGCTAACTT
TTTGAATATTGCCGTATATTAAAAAGTCTAATCAAGAAGAAGCAAGATACTCTTTTAAAA
ATATATAACATGCAAAGTTTTCAGGCAAACATGATGAAAACTATGTTTTTATGAATACTA
TTAAAATATTGAAGCAAGAGAAATGCAAATAGAATTAAGTGATGACCAAAATGTAAAATA
CCATTGTAGACTTCAAAGGCTTCATTTCTACTTAATAGGATACCAAATGTAAATGTTGTA
ACTAATTTATTCTATGTTTCTCTCTTTTTTCTTGTAAAACAAGACTAAGAAGATTTTGAT
ATTATATAATGTATTTCAGACAAGGGTATTTTCACTTACTATATATAACTATATATATAT
ATAAGTTTAGGTATATTTCTGTGATCAAAAATGCACTCCTTAAAAAATATAGTTCTAAAG
AAAAATAGCTCATATAAGCGAGTGTCCCCTGATTTAGTGAGAAACAGGTGTAGTTTCAGG
AGAATGTGGCAAACAATTCATTTGATCGACATAAATACTCAAAAGTTTGTCCTTCCAGTT
TTCCATCTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGAGTAAAATCTGAAAGAATACACTGTACTATGTGAGTCATACAAATACATTCAATC
TTTAATTTCTAGTGTCTGTTTCTACTAACAAAGATTTTAAAGTAAATTCACAAAAATGCA
GCTTTCCCCATTATTTGAAAAGATTAAGGAAGAGAGTAGCTTTAGGGAAGAAGCTAACTT
TTTGAATATTGCCGTATATTAAAAAGTCTAATCAAGAAGAAGCAAGATACTCTTTTAAAA
ATATATAACATGCAAAGTTTTCAGGCAAACATGATGAAAACTATGTTTTTATGAATACTA
TTAAAATATTGAAGCAAGAGAAATGCAAATAGAATTAAGTGATGACCAAAATGTAAAATA
CCATTGTAGACTTCAAAGGCTTCATTTCTACTTAATAGGATACCAAATGTAAATGTTGTA
ACTAATTTATTCTATGTTTCTCTCTTTTTTCTTGTAAAACAAGACTAAGAAGATTTTGAT
ATTATATAATGTATTTCAGACAAGGGTATTTTCACTTACTATATATAACTATATATATAT
ATAAGTTTAGGTATATTTCTGTGATCAAAAATGCACTCCTTAAAAAATATAGTTCTAAAG
AAAAATAGCTCATATAAGCGAGTGTCCCCTGATTTAGTGAGAAACAGGTGTAGTTTCAGG
AGAATGTGGCAAACAATTCATTTGATCGACATAAATACTCAAAAGTTTGTCCTTCCAGTT
TTCCATCTTATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-729, gnl|bosTau2|chr4 (20087019-20087752)
               

               
               1-729, gnl|Hg17|chr7 (76468741-76468040)
               

               
               1-729, gnl|Mm7|chr5 (20414779-20415441)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-729, gnl|bosTau2|chr4 (20087019-20087752)
               

               
               1-729, gnl|Hg17|chr7 (76468741-76468040)
               

               
               1-729, gnl|Mm7|chr5 (20414779-20415441)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)

	1-729, gnl\|bosTau2\|chr4 (20087019-20087752)
	1-729, gnl\|Hg17\|chr7 (76468741-76468040)
	1-729, gnl\|Mm7\|chr5 (20414779-20415441)