Non-Coding RNA Search

Ss1.1-rova005_p4.5

Sequence:


               
               GGTAGAGCTTGCATTGATCCTTTTCCACAAGTATTAAACTGCCAAGATGTGAATTTGCAA
AGTCTTTATGAACCAATAATAACGGTACTTCAACTTGGGGAGCGTGTAATAATTTGGACT
GTTGCTCCCCCTTACCCCTGCACCCCCCATTAAGTGAGAGCAACAGGCCCTGATTTAGGT
TCCAAAGCCAGTAAGTACATGTTTCCTGTTGGGAAGATTTGGTGTAATAAACACCAAACT
ATTAGACGGAGACGAAGGCGATGTGACTTGTAATACCAGAATAGCTGATGAAACTAGTTC
CTATAAAAAGCTTAGCCTGCCTTAAAACTAGACATCAATTTTCTCAGCTGCAGAAGCTTC
TAGCCTTTCAAAAAAGTTCATACTTTATAAAGTTGCAGAGAAGCATTTATTTTCCAGTCC
TTTCCCCAATGTTACTTCCAAATAAAGTATTCCTATGTTGCTTTAGTATTTATTACAATT
TAACAAAAAAGGGTTTGAAATGTAGCTGTTCTTTAAGTATAAAATACCCAGCTTGGACCA
TTACTGCCGGAGAAGAGTTTTATTGAATGGCTATTTCCCTACCTAAAAGAGGTCTCAAAC
TGAATTTATTGGGCTACGCTAAAGAATGCAGTATATTTAGTTTTCCATTTGCATGATGTG
TGTTTGTGCTATAGATGATATTTTAAATTGAAGAATTTGTTTTAAATTATTTTTACAGTG
AAGACTGTTTTCAGCTCTTTTTATATTGTACATAGTCTTTTATGTAATCTACTGGCATAT
GTTTTGTAGACTGTTTAATGACTGGATATCTTCCTCCAACTTTTGAAATACAAAACCAGT
GTTTTATACTTGTACACTGTTTTAAAGTCTATTAAAATTGACATTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGAGCTTGCATTGATCCTTTTCCACAAGTATTAAACTGCCAAGATGTGAATTTGCAA
AGTCTTTATGAACCAATAATAACGGTACTTCAACTTGGGGAGCGTGTAATAATTTGGACT
GTTGCTCCCCCTTACCCCTGCACCCCCCATTAAGTGAGAGCAACAGGCCCTGATTTAGGT
TCCAAAGCCAGTAAGTACATGTTTCCTGTTGGGAAGATTTGGTGTAATAAACACCAAACT
ATTAGACGGAGACGAAGGCGATGTGACTTGTAATACCAGAATAGCTGATGAAACTAGTTC
CTATAAAAAGCTTAGCCTGCCTTAAAACTAGACATCAATTTTCTCAGCTGCAGAAGCTTC
TAGCCTTTCAAAAAAGTTCATACTTTATAAAGTTGCAGAGAAGCATTTATTTTCCAGTCC
TTTCCCCAATGTTACTTCCAAATAAAGTATTCCTATGTTGCTTTAGTATTTATTACAATT
TAACAAAAAAGGGTTTGAAATGTAGCTGTTCTTTAAGTATAAAATACCCAGCTTGGACCA
TTACTGCCGGAGAAGAGTTTTATTGAATGGCTATTTCCCTACCTAAAAGAGGTCTCAAAC
TGAATTTATTGGGCTACGCTAAAGAATGCAGTATATTTAGTTTTCCATTTGCATGATGTG
TGTTTGTGCTATAGATGATATTTTAAATTGAAGAATTTGTTTTAAATTATTTTTACAGTG
AAGACTGTTTTCAGCTCTTTTTATATTGTACATAGTCTTTTATGTAATCTACTGGCATAT
GTTTTGTAGACTGTTTAATGACTGGATATCTTCCTCCAACTTTTGAAATACAAAACCAGT
GTTTTATACTTGTACACTGTTTTAAAGTCTATTAAAATTGACATTTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr28 (17272399-17271507)
               

               
               1-888, gnl|Hg17|chr10 (69347211-69348135)
               

               
               1-888, gnl|Mm7|chr10 (62838673-62837807)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr28 (17272399-17271507)
               

               
               1-888, gnl|Hg17|chr10 (69347211-69348135)
               

               
               1-888, gnl|Mm7|chr10 (62838673-62837807)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	1-888, gnl\|bosTau2\|chr28 (17272399-17271507)
	1-888, gnl\|Hg17\|chr10 (69347211-69348135)
	1-888, gnl\|Mm7\|chr10 (62838673-62837807)

	tra (0.246184)
	sag (0.182715)
	sin (0.174948)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)