Non-Coding RNA Search

Ss1.1-rova008_c13.5.5

Sequence:


               
               TCTGCGTGCATCTGCCTTTTTCTTGGTTTCTTCGCGCCGACCCGCCTCTGCTCGCCTGTT
CGGTCCTGTGTCCCTGGCCTCCGTGCCTTCGCCGCTCCTCAGACGGAGACTGGGGCGGCT
TGGCGAAGGCTGGCGCGTCCGGGCTGGGTTAACCCAGTGCCCTCGGACCTTCGTTTTACC
AGGATGTGATGGGCGAGCGGGGAGTTTGCGGCAAAATGGCCAAACGCACCAAGAAGGTCG
GAATCGTGGGCAAATACGGGACCCGTTATGGTGCTTCCCTCAGGAAAATGGTGAAGAAAA
TTGAAATCAGTCAGCACGCCAAGTACACTTGCTCCTTCTGTGGCAAAACCAAGATGAAGA
GACGAGCTGTGGGCATCTGGCACTGTGGTTCCTGCATGAAAACGGTAGCTGGTGGTGCCT
GGACCTACAACACCACTTCTGCTGTCACAGTAAAGTCTGCCATCAGAAGACTGAAGGAAT
TGAAGGACCAGTAGAAGCACCACCAGTGGAAATTTTGCTAGCCTATAATAAATGGGTTAA
TTTATGTAACAGAACTACTTTGGTTTGTTGACATTCTTATTTGCATTAATTTTGCTTTCT
TAAAAAAGACTTGGAAATTAAAATCCTTTTAATTTTCTTATAAAATCATGCTGAGATGGG
TTGTCACAATCTATTGTTTTTTTTGGTAGTCAGATGATATATGACATAAGCCTAAGGCTT
TCCTTGCCAGTTCGACTTCTTTGAGATACATCACGCTGTGCAAACTTGTTTTAAAATCAC
AGTCTGTCTATATTTTAAGATATTTTAACATACATTGCCTATTAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCGTGCATCTGCCTTTTTCTTGGTTTCTTCGCGCCGACCCGCCTCTGCTCGCCTGTT
CGGTCCTGTGTCCCTGGCCTCCGTGCCTTCGCCGCTCCTCAGACGGAGACTGGGGCGGCT
TGGCGAAGGCTGGCGCGTCCGGGCTGGGTTAACCCAGTGCCCTCGGACCTTCGTTTTACC
AGGATGTGATGGGCGAGCGGGGAGTTTGCGGCAAAATGGCCAAACGCACCAAGAAGGTCG
GAATCGTGGGCAAATACGGGACCCGTTATGGTGCTTCCCTCAGGAAAATGGTGAAGAAAA
TTGAAATCAGTCAGCACGCCAAGTACACTTGCTCCTTCTGTGGCAAAACCAAGATGAAGA
GACGAGCTGTGGGCATCTGGCACTGTGGTTCCTGCATGAAAACGGTAGCTGGTGGTGCCT
GGACCTACAACACCACTTCTGCTGTCACAGTAAAGTCTGCCATCAGAAGACTGAAGGAAT
TGAAGGACCAGTAGAAGCACCACCAGTGGAAATTTTGCTAGCCTATAATAAATGGGTTAA
TTTATGTAACAGAACTACTTTGGTTTGTTGACATTCTTATTTGCATTAATTTTGCTTTCT
TAAAAAAGACTTGGAAATTAAAATCCTTTTAATTTTCTTATAAAATCATGCTGAGATGGG
TTGTCACAATCTATTGTTTTTTTTGGTAGTCAGATGATATATGACATAAGCCTAAGGCTT
TCCTTGCCAGTTCGACTTCTTTGAGATACATCACGCTGTGCAAACTTGTTTTAAAATCAC
AGTCTGTCTATATTTTAAGATATTTTAACATACATTGCCTATTAACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62822530|gb|AAY15078.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62822530|gb|AAY15078.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               402-521, - strand, RNAz p=0.561277

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, - strand, RNAz p=0.561277

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK128048, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK128048, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               203-531, gnl|bosTau2|chr10 (50586118-50585794)
               

               
               203-531, gnl|Hg17|chr20 (42528909-42528605)
               

               
               203-531, gnl|Mm7|chr13 (72657424-72657731)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-531, gnl|bosTau2|chr10 (50586118-50585794)
               

               
               203-531, gnl|Hg17|chr20 (42528909-42528605)
               

               
               203-531, gnl|Mm7|chr13 (72657424-72657731)

Expressed library(ies): 71 entry(ies)

More info

Expressed library(ies): 71 entry(ies)

Help | Less info


               
               mcp (4.60751)
               

               
               amn (4.59482)
               

               
               nca (3.28497)
               

               
               elu (3.08285)
               

               
               fty (2.98927)
               

               
               lnt (2.84616)
               

               
               nep (2.75887)
               

               
               med (2.6738)
               

               
               nje (2.4888)
               

               
               eje (2.47084)
               

               
               fli (2.02881)
               

               
               cag (1.96553)
               

               
               nlu (1.91681)
               

               
               fce (1.90114)
               

               
               ese (1.89753)
               

               
               eru (1.80072)
               

               
               nbm (1.78784)
               

               
               duo (1.72801)
               

               
               nco (1.61734)
               

               
               nms (1.49701)
               

               
               cbe (1.43541)
               

               
               pty (1.42714)
               

               
               ecc (1.38042)
               

               
               col (1.36505)
               

               
               ebs (1.30131)
               

               
               csp (1.28949)
               

               
               ill (1.22915)
               

               
               eli (1.0627)
               

               
               jca (1.02564)
               

               
               eye (1.02302)
               

               
               eep (0.980512)
               

               
               cmu (0.931966)
               

               
               ece (0.917221)
               

               
               sto (0.899119)
               

               
               fbs (0.876732)
               

               
               mas (0.84122)
               

               
               cov (0.792917)
               

               
               fcc (0.791139)
               

               
               ova (0.774793)
               

               
               hyp (0.714184)
               

               
               csk (0.70373)
               

               
               rec (0.692281)
               

               
               cly (0.603209)
               

               
               bfe (0.599431)
               

               
               hlv (0.557025)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               cli (0.458435)
               

               
               spc (0.453463)
               

               
               nmm (0.398406)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               bla (0.124347)

Expressed library(ies): 71 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (4.60751)
               

               
               amn (4.59482)
               

               
               nca (3.28497)
               

               
               elu (3.08285)
               

               
               fty (2.98927)
               

               
               lnt (2.84616)
               

               
               nep (2.75887)
               

               
               med (2.6738)
               

               
               nje (2.4888)
               

               
               eje (2.47084)
               

               
               fli (2.02881)
               

               
               cag (1.96553)
               

               
               nlu (1.91681)
               

               
               fce (1.90114)
               

               
               ese (1.89753)
               

               
               eru (1.80072)
               

               
               nbm (1.78784)
               

               
               duo (1.72801)
               

               
               nco (1.61734)
               

               
               nms (1.49701)
               

               
               cbe (1.43541)
               

               
               pty (1.42714)
               

               
               ecc (1.38042)
               

               
               col (1.36505)
               

               
               ebs (1.30131)
               

               
               csp (1.28949)
               

               
               ill (1.22915)
               

               
               eli (1.0627)
               

               
               jca (1.02564)
               

               
               eye (1.02302)
               

               
               eep (0.980512)
               

               
               cmu (0.931966)
               

               
               ece (0.917221)
               

               
               sto (0.899119)
               

               
               fbs (0.876732)
               

               
               mas (0.84122)
               

               
               cov (0.792917)
               

               
               fcc (0.791139)
               

               
               ova (0.774793)
               

               
               hyp (0.714184)
               

               
               csk (0.70373)
               

               
               rec (0.692281)
               

               
               cly (0.603209)
               

               
               bfe (0.599431)
               

               
               hlv (0.557025)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               cli (0.458435)
               

               
               spc (0.453463)
               

               
               nmm (0.398406)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               bla (0.124347)

	203-531, gnl\|bosTau2\|chr10 (50586118-50585794)
	203-531, gnl\|Hg17\|chr20 (42528909-42528605)
	203-531, gnl\|Mm7\|chr13 (72657424-72657731)

	mcp (4.60751)
	amn (4.59482)
	nca (3.28497)
	elu (3.08285)
	fty (2.98927)
	lnt (2.84616)
	nep (2.75887)
	med (2.6738)
	nje (2.4888)
	eje (2.47084)
	fli (2.02881)
	cag (1.96553)
	nlu (1.91681)
	fce (1.90114)
	ese (1.89753)
	eru (1.80072)
	nbm (1.78784)
	duo (1.72801)
	nco (1.61734)
	nms (1.49701)
	cbe (1.43541)
	pty (1.42714)
	ecc (1.38042)
	col (1.36505)
	ebs (1.30131)
	csp (1.28949)
	ill (1.22915)
	eli (1.0627)
	jca (1.02564)
	eye (1.02302)
	eep (0.980512)
	cmu (0.931966)
	ece (0.917221)
	sto (0.899119)
	fbs (0.876732)
	mas (0.84122)
	cov (0.792917)
	fcc (0.791139)
	ova (0.774793)
	hyp (0.714184)
	csk (0.70373)
	rec (0.692281)
	cly (0.603209)
	bfe (0.599431)
	hlv (0.557025)
	ute (0.531138)
	fhi (0.508733)
	thg (0.507164)
	mgp (0.461361)
	cli (0.458435)
	spc (0.453463)
	nmm (0.398406)
	ton (0.351)
	sin (0.349895)
	cut (0.339847)
	vin (0.332557)
	sme (0.305437)
	jej (0.296765)
	cte (0.29274)
	lin (0.291206)
	cga (0.279096)
	che (0.272628)
	pla (0.267344)
	pgl (0.236967)
	aor (0.195274)
	sag (0.182715)
	mga (0.160205)
	fco (0.157208)
	fat (0.147427)
	cst (0.140036)
	bla (0.124347)