Non-Coding RNA Search

Ss1.1-rova008_c8.5

Sequence:


               
               TTTTTTTTTAGTACAAAGTTTTTAGTTTCTTTTTCATGATGTGGTAACTACGAAGTGATG
GTAGATTTAAATAATTTTTTATTTTTATTTTATATATTTTTTCATTAGGGCCATATCTCA
AAAAAAAAAGAAAAAATACAAAAAACAAAAACAAATAAAAAAACAAAAAAAAAAAGAGGG
TAATGTACAAGTTTCTGTATGTATAAAGTCGTGCTCTATTTCGGGAGAGCAGCTGATTAC
AATTTGCTTCATGAATCAAGGTGTGGAAATGGTTGCATATGGATTGATTTAGATAATGGT
TACCCGTACAGACAAAAAGAAAAAACATACAACTAAAAGGAAGAAACACAACTTCAAAGA
TTTTTCAGTGACGAGATTCCACATTTGTATTTCAAGATAATGTAGTTTAAAAAAAAAAAA
GAAAAAAAAAAACTTGATGTAAATTCCTCCTTTTCCTCTGGCTTAATGAATATCATTTAT
TCAGTATAAAATCTTTATATGTTCCACATGTTAAGAATAAATGTACATTAAATCTTGTTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTAGTACAAAGTTTTTAGTTTCTTTTTCATGATGTGGTAACTACGAAGTGATG
GTAGATTTAAATAATTTTTTATTTTTATTTTATATATTTTTTCATTAGGGCCATATCTCA
AAAAAAAAAGAAAAAATACAAAAAACAAAAACAAATAAAAAAACAAAAAAAAAAAGAGGG
TAATGTACAAGTTTCTGTATGTATAAAGTCGTGCTCTATTTCGGGAGAGCAGCTGATTAC
AATTTGCTTCATGAATCAAGGTGTGGAAATGGTTGCATATGGATTGATTTAGATAATGGT
TACCCGTACAGACAAAAAGAAAAAACATACAACTAAAAGGAAGAAACACAACTTCAAAGA
TTTTTCAGTGACGAGATTCCACATTTGTATTTCAAGATAATGTAGTTTAAAAAAAAAAAA
GAAAAAAAAAAACTTGATGTAAATTCCTCCTTTTCCTCTGGCTTAATGAATATCATTTAT
TCAGTATAAAATCTTTATATGTTCCACATGTTAAGAATAAATGTACATTAAATCTTGTTA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-237, - strand, RNAz p=0.627439
               

               
               318-422, - strand, RNAz p=0.67181

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, - strand, RNAz p=0.627439
               

               
               318-422, - strand, RNAz p=0.67181

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               30-125, + strand, RNAmicro p=0.988491

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               30-125, + strand, RNAmicro p=0.988491

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-541, gnl|bosTau2|chr9 (56948305-56947785)
               

               
               1-541, gnl|Hg17|chr6 (157621972-157622506)
               

               
               1-541, gnl|Mm7|chr17 (5289244-5289798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-541, gnl|bosTau2|chr9 (56948305-56947785)
               

               
               1-541, gnl|Hg17|chr6 (157621972-157622506)
               

               
               1-541, gnl|Mm7|chr17 (5289244-5289798)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fat (0.294855)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	120-237, - strand, RNAz p=0.627439
	318-422, - strand, RNAz p=0.67181

	1-541, gnl\|bosTau2\|chr9 (56948305-56947785)
	1-541, gnl\|Hg17\|chr6 (157621972-157622506)
	1-541, gnl\|Mm7\|chr17 (5289244-5289798)

	fat (0.294855)
	fty (0.17584)
	rec (0.17307)
	hyp (0.142837)
	nca (0.136874)
	pla (0.133672)
	ova (0.129132)
	eru (0.120048)
	med (0.116252)