Non-Coding RNA Search

Ss1.1-rova008_i12.5

Sequence:


               
               GGTGGCTTTCGCCCAATTATGCTGTGATTATTCTGCTGCACTGTAATTGACTGGGGAGAT
ATGCTAATACCTGTCATTTGGGATGATAAAAGATGAGCGGGGGACGCAATGCATTATTTA
GCTGGCTGTGTGATAGATGAGGGATGCGCAGAGTGCTTTAATTGCTGAGAAGAGAGGTTA
AGCTGAACGAACGGATGAATTAGAAATGAGTTTTTTTATGGCTGGTGGAAAAGTGAAATA
AAGGAAAATGTGCCTTAAACTAAAGCAGCAGATAGAAATGAGCACAACGAAACTAGATCT
AGGCAGCCTGCGTTATCAATTTAAATGTTAAGGAAAAATGCACTTTAGAGTTGAGTAAAT
AATAATTGGAAGGAGACTATACAATAGAGTCTCATATGAAGCCAAAAAAATTGTTAAAGG
AATTGCTTTTATTCGAGATGGCAATATTTAAGATTTGTAACCTCTTAAAATCATACTGTA
CTTTAGGTTATGCCGAAATGTAGTATGCAACTATTCTGAAAACATGAATCTTTTGAGTGT
TAGCTTACAGGTATCTAGATTTCTTGTGCCTGTGTATCTTTTTAGTAAATGCAGGCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCTTTCGCCCAATTATGCTGTGATTATTCTGCTGCACTGTAATTGACTGGGGAGAT
ATGCTAATACCTGTCATTTGGGATGATAAAAGATGAGCGGGGGACGCAATGCATTATTTA
GCTGGCTGTGTGATAGATGAGGGATGCGCAGAGTGCTTTAATTGCTGAGAAGAGAGGTTA
AGCTGAACGAACGGATGAATTAGAAATGAGTTTTTTTATGGCTGGTGGAAAAGTGAAATA
AAGGAAAATGTGCCTTAAACTAAAGCAGCAGATAGAAATGAGCACAACGAAACTAGATCT
AGGCAGCCTGCGTTATCAATTTAAATGTTAAGGAAAAATGCACTTTAGAGTTGAGTAAAT
AATAATTGGAAGGAGACTATACAATAGAGTCTCATATGAAGCCAAAAAAATTGTTAAAGG
AATTGCTTTTATTCGAGATGGCAATATTTAAGATTTGTAACCTCTTAAAATCATACTGTA
CTTTAGGTTATGCCGAAATGTAGTATGCAACTATTCTGAAAACATGAATCTTTTGAGTGT
TAGCTTACAGGTATCTAGATTTCTTGTGCCTGTGTATCTTTTTAGTAAATGCAGGCAGAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-600, gnl|bosTau2|chr9 (57101121-57100517)
               

               
               2-600, gnl|Hg17|chr6 (157464317-157464915)
               

               
               2-600, gnl|Mm7|chr17 (5158304-5158878)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-600, gnl|bosTau2|chr9 (57101121-57100517)
               

               
               2-600, gnl|Hg17|chr6 (157464317-157464915)
               

               
               2-600, gnl|Mm7|chr17 (5158304-5158878)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               tra (0.123092)

	2-600, gnl\|bosTau2\|chr9 (57101121-57100517)
	2-600, gnl\|Hg17\|chr6 (157464317-157464915)
	2-600, gnl\|Mm7\|chr17 (5158304-5158878)