Non-Coding RNA Search

Ss1.1-rova009_l10.5

Sequence:


               
               TTGAGAAACTTGTATTGCAGACTCCCTTGGGGAGTTTAAGTAGCACTACTGTTCTTGAAA
GGGTTTTATTTTTACCTTCACCTGCTCTGCTAACATCCAGTCCAACTGGGCTGATTTGAA
GAGACCACGTGTGAACACCTGACATTGGGGGACCACCTTGAAAAGGCGATTAATTGGTCT
GAACAGCTTGTTGTCTTCTGTGTTTATGTAATGTTTTTGTTTGTTTTAAAGGACTAATGT
TTATTATTCCAGTGTTAAGTGAAAGTGTAATATACTAAGTGTGTAGAATAAAAGTGCAAT
AACAAGAGAAAATAACTTTGGCACAAACTTCACTTCTTCCACTCTCTCCCTTCTTGTGCT
ACCTGTCTCTTTCCATAATATTGTTACAGCAGGACAGTGTTAATTGTGTGTATTTTTTAA
GAGAGGCAACTATGGGTTCAGTCTTCATTTAGTGTAATTTTGAATGGCTAGGTTTGATTT
TATATTGTGTATACTTGTCGGGATGCACAAATACCAGATGTGCTGTACAATAAAGATGAC
ATTAACGTTTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGAAACTTGTATTGCAGACTCCCTTGGGGAGTTTAAGTAGCACTACTGTTCTTGAAA
GGGTTTTATTTTTACCTTCACCTGCTCTGCTAACATCCAGTCCAACTGGGCTGATTTGAA
GAGACCACGTGTGAACACCTGACATTGGGGGACCACCTTGAAAAGGCGATTAATTGGTCT
GAACAGCTTGTTGTCTTCTGTGTTTATGTAATGTTTTTGTTTGTTTTAAAGGACTAATGT
TTATTATTCCAGTGTTAAGTGAAAGTGTAATATACTAAGTGTGTAGAATAAAAGTGCAAT
AACAAGAGAAAATAACTTTGGCACAAACTTCACTTCTTCCACTCTCTCCCTTCTTGTGCT
ACCTGTCTCTTTCCATAATATTGTTACAGCAGGACAGTGTTAATTGTGTGTATTTTTTAA
GAGAGGCAACTATGGGTTCAGTCTTCATTTAGTGTAATTTTGAATGGCTAGGTTTGATTT
TATATTGTGTATACTTGTCGGGATGCACAAATACCAGATGTGCTGTACAATAAAGATGAC
ATTAACGTTTTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr16 (3609789-3609259)
               

               
               1-552, gnl|Hg17|chr1 (201843846-201843288)
               

               
               1-552, gnl|Mm7|chr1 (132367279-132367880)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr16 (3609789-3609259)
               

               
               1-552, gnl|Hg17|chr1 (201843846-201843288)
               

               
               1-552, gnl|Mm7|chr1 (132367279-132367880)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               csk (0.281492)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-552, gnl\|bosTau2\|chr16 (3609789-3609259)
	1-552, gnl\|Hg17\|chr1 (201843846-201843288)
	1-552, gnl\|Mm7\|chr1 (132367279-132367880)

	csk (0.281492)
	ova (0.258264)
	bla (0.248694)
	aor (0.195274)
	eye (0.170503)
	hyp (0.142837)
	spc (0.113366)