Non-Coding RNA Search

Ss1.1-rova009_l20.5

Sequence:


               
               TGGGGCCGTGTGCAGATCCGCGTGTGGCGCAGGCAAGGACCCTGAAAATAAACAGCCGCT
GTCTTGCGAGCCGCCGTCCCCGGCCTGCGTCCGAGTCTCCGCCGCTGCGGACCGCTCAGA
CGCCGAAGATCTAACTGCAGCCATGAGCAGCAATGAATGCTTCAAGTGTGGACGATCTGG
CCACTGGGCCCGGGAGTGCCCCACTGGTGGGGGCCGTGGTCGTGGAATGAGAAGCCGTGG
CAGAGGTGGTTTTACCTCGGATAGAGGTTTCCAGTTTGTTTCTTCGTCTCTTCCAGACAT
CTGTTACCGCTGTGGTGAGTCTGGTCATCTTGCCAAGGATTGTGATCTCCAAGAGGATGC
CTGCTATAACTGCGGTAGAGGAGGCCACATTGCCAAGGACTGCAAGGAGCCCAAGAGAGA
GCGAGAGCAGTGCTGCTACAACTGCGGCAAACCCGGCCACCTGGCCCGCGACTGTGACCA
TGCGGATGAGCAGAAGTGCTATTCTTGTGGAGAGTTTGGGCACATTCAGAAAGACTGCAC
CAAAGTGAAGTGCTATAGGTGTGGCGAAACTGGTCATGTAGCCATCAACTGCAGCAAGAC
GAGTGAAGTCAACTGTTACCGCTGTGGCGAGTCAGGGCACCTTGCACGGGAATGCACGAT
TGAGGCCACAGCTTAATTATTTTCCTTTGTCGCCCCTCCTTTTCTGATTGATGGTTGTAT
TATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTACTCCCAGGCC
AGTGAGCTTTACTTGCCGTGTAAAAGGAGGAAAGGGGTGGAAAAAAAAATCGACTTTCTG
CATTTAACTACAAAAAAAGTTTATGTTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTG
TTAAAGAACCCCCTTTCCACGCCACTGGTGAATAGGGATTGATGAATGGGAAGAGTTGAG
TCAGACCAGTAAGCCCGTTCTGGGTTTCTCGAATATGTTCCCATGTAGGAGGTAAAACCA
ATTCTGGAAGTGTCTATGAACTTCCGTAAATAACTTTTAATTTTAGCATAATGATGGCCT
TGGATTGTCTGACCTCAGTAGCTATTAAATAACATCAAGTAACATCTGTATCAGGCCCTA
CATAGAACATACAGTTGAGTGGGAGTAAACAAAATAAAAAGACAAACATGCGTGTTAATG
GCTATGGAAGAAAACTTGGGATAAAAGTCTAAACAGGAACAACTTCATCACAGCATTGAT
GCTGGGTATACAGATGGTGTTGGCAAAGGTTTAGAACACATTTTTTCGAAGACTAAATCT
AAAACCCAGAGTAAAAACATCTATACTCAGAGTTAGCATAATTTGGAGCTATTCAGGAAC
TGCAAAGAAATGCATTTTCACAGAAATCAAGATGTTATTTTTGTATACTATATCACTTAG
ACAACTGTGTTTCATTTGCTGTAATCAGTTTTTAAAAGTCAGATGGTAAAAGCAACTGAA
GTTCTAGAAAATAGAAATGTAATTTTAAACTATCCAATAAAGCTGGAGGAGGAAGGGGAA
AAAAAAAAAAAAAAAAAAAAAAAATTTCAAATTTTCCTTAATGTATATAGTTAAAAATGC
CATATTAAAGAGGGGAGTGTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGCCGTGTGCAGATCCGCGTGTGGCGCAGGCAAGGACCCTGAAAATAAACAGCCGCT
GTCTTGCGAGCCGCCGTCCCCGGCCTGCGTCCGAGTCTCCGCCGCTGCGGACCGCTCAGA
CGCCGAAGATCTAACTGCAGCCATGAGCAGCAATGAATGCTTCAAGTGTGGACGATCTGG
CCACTGGGCCCGGGAGTGCCCCACTGGTGGGGGCCGTGGTCGTGGAATGAGAAGCCGTGG
CAGAGGTGGTTTTACCTCGGATAGAGGTTTCCAGTTTGTTTCTTCGTCTCTTCCAGACAT
CTGTTACCGCTGTGGTGAGTCTGGTCATCTTGCCAAGGATTGTGATCTCCAAGAGGATGC
CTGCTATAACTGCGGTAGAGGAGGCCACATTGCCAAGGACTGCAAGGAGCCCAAGAGAGA
GCGAGAGCAGTGCTGCTACAACTGCGGCAAACCCGGCCACCTGGCCCGCGACTGTGACCA
TGCGGATGAGCAGAAGTGCTATTCTTGTGGAGAGTTTGGGCACATTCAGAAAGACTGCAC
CAAAGTGAAGTGCTATAGGTGTGGCGAAACTGGTCATGTAGCCATCAACTGCAGCAAGAC
GAGTGAAGTCAACTGTTACCGCTGTGGCGAGTCAGGGCACCTTGCACGGGAATGCACGAT
TGAGGCCACAGCTTAATTATTTTCCTTTGTCGCCCCTCCTTTTCTGATTGATGGTTGTAT
TATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTACTCCCAGGCC
AGTGAGCTTTACTTGCCGTGTAAAAGGAGGAAAGGGGTGGAAAAAAAAATCGACTTTCTG
CATTTAACTACAAAAAAAGTTTATGTTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTG
TTAAAGAACCCCCTTTCCACGCCACTGGTGAATAGGGATTGATGAATGGGAAGAGTTGAG
TCAGACCAGTAAGCCCGTTCTGGGTTTCTCGAATATGTTCCCATGTAGGAGGTAAAACCA
ATTCTGGAAGTGTCTATGAACTTCCGTAAATAACTTTTAATTTTAGCATAATGATGGCCT
TGGATTGTCTGACCTCAGTAGCTATTAAATAACATCAAGTAACATCTGTATCAGGCCCTA
CATAGAACATACAGTTGAGTGGGAGTAAACAAAATAAAAAGACAAACATGCGTGTTAATG
GCTATGGAAGAAAACTTGGGATAAAAGTCTAAACAGGAACAACTTCATCACAGCATTGAT
GCTGGGTATACAGATGGTGTTGGCAAAGGTTTAGAACACATTTTTTCGAAGACTAAATCT
AAAACCCAGAGTAAAAACATCTATACTCAGAGTTAGCATAATTTGGAGCTATTCAGGAAC
TGCAAAGAAATGCATTTTCACAGAAATCAAGATGTTATTTTTGTATACTATATCACTTAG
ACAACTGTGTTTCATTTGCTGTAATCAGTTTTTAAAAGTCAGATGGTAAAAGCAACTGAA
GTTCTAGAAAATAGAAATGTAATTTTAAACTATCCAATAAAGCTGGAGGAGGAAGGGGAA
AAAAAAAAAAAAAAAAAAAAAAAATTTCAAATTTTCCTTAATGTATATAGTTAAAAATGC
CATATTAAAGAGGGGAGTGTGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5QJQ8_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5QJQ8_RAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               713-858, + strand, RNAz p=0.98092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               713-858, + strand, RNAz p=0.98092

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003418, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003418, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               125-268, gnl|bosTau2|chr22 (47590608-47590465)
               

               
               125-268, gnl|Hg17|chr3 (130373316-130373173)
               

               
               125-268, gnl|Mm7|chr6 (87920890-87920747)
               


               
               556-1633, gnl|bosTau2|chr22 (47589340-47588270)
               

               
               556-1633, gnl|Hg17|chr3 (130372114-130371044)
               

               
               556-1633, gnl|Mm7|chr6 (87919254-87918191)
               


               
               678-858, gnl|bosTau2|chr12 (23056568-23056394)
               

               
               678-858, gnl|Hg17|chr3 (130371993-130371813)
               

               
               678-858, gnl|Mm7|chr6 (87919131-87918952)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-268, gnl|bosTau2|chr22 (47590608-47590465)
               

               
               125-268, gnl|Hg17|chr3 (130373316-130373173)
               

               
               125-268, gnl|Mm7|chr6 (87920890-87920747)
               


               
               556-1633, gnl|bosTau2|chr22 (47589340-47588270)
               

               
               556-1633, gnl|Hg17|chr3 (130372114-130371044)
               

               
               556-1633, gnl|Mm7|chr6 (87919254-87918191)
               


               
               678-858, gnl|bosTau2|chr12 (23056568-23056394)
               

               
               678-858, gnl|Hg17|chr3 (130371993-130371813)
               

               
               678-858, gnl|Mm7|chr6 (87919131-87918952)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               tbr (4.9337)
               

               
               isp (3.90977)
               

               
               bfe (3.74644)
               

               
               vin (3.32557)
               

               
               fat (2.50627)
               

               
               ste (2.43375)
               

               
               mgp (2.30681)
               

               
               sag (2.19258)
               

               
               cbe (2.15311)
               

               
               sme (1.83262)
               

               
               ret (1.67353)
               

               
               ldo (1.55204)
               

               
               liv (1.46284)
               

               
               lun (1.3544)
               

               
               gul (1.24312)
               

               
               lyg (1.19792)
               

               
               aor (1.17165)
               

               
               mga (1.12144)
               

               
               tra (1.10783)
               

               
               ssp (1.08416)
               

               
               ova (1.03306)
               

               
               bla (0.994777)
               

               
               kid (0.908147)
               

               
               fty (0.879198)
               

               
               sin (0.874738)
               

               
               mas (0.84122)
               

               
               hea (0.817996)
               

               
               fco (0.78604)
               

               
               sug (0.763747)
               

               
               eep (0.735384)
               

               
               lin (0.728014)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               nms (0.641574)
               

               
               thg (0.633955)
               

               
               ese (0.632511)
               

               
               tes (0.623441)
               

               
               pgl (0.592417)
               

               
               ski (0.586941)
               

               
               jca (0.569801)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               pro (0.512033)
               

               
               nje (0.49776)
               

               
               eru (0.480192)
               

               
               pan (0.471921)
               

               
               med (0.465008)
               

               
               spl (0.429553)
               

               
               hyp (0.42851)
               

               
               cty (0.41632)
               

               
               ill (0.351185)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (4.9337)
               

               
               isp (3.90977)
               

               
               bfe (3.74644)
               

               
               vin (3.32557)
               

               
               fat (2.50627)
               

               
               ste (2.43375)
               

               
               mgp (2.30681)
               

               
               sag (2.19258)
               

               
               cbe (2.15311)
               

               
               sme (1.83262)
               

               
               ret (1.67353)
               

               
               ldo (1.55204)
               

               
               liv (1.46284)
               

               
               lun (1.3544)
               

               
               gul (1.24312)
               

               
               lyg (1.19792)
               

               
               aor (1.17165)
               

               
               mga (1.12144)
               

               
               tra (1.10783)
               

               
               ssp (1.08416)
               

               
               ova (1.03306)
               

               
               bla (0.994777)
               

               
               kid (0.908147)
               

               
               fty (0.879198)
               

               
               sin (0.874738)
               

               
               mas (0.84122)
               

               
               hea (0.817996)
               

               
               fco (0.78604)
               

               
               sug (0.763747)
               

               
               eep (0.735384)
               

               
               lin (0.728014)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               nms (0.641574)
               

               
               thg (0.633955)
               

               
               ese (0.632511)
               

               
               tes (0.623441)
               

               
               pgl (0.592417)
               

               
               ski (0.586941)
               

               
               jca (0.569801)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               pro (0.512033)
               

               
               nje (0.49776)
               

               
               eru (0.480192)
               

               
               pan (0.471921)
               

               
               med (0.465008)
               

               
               spl (0.429553)
               

               
               hyp (0.42851)
               

               
               cty (0.41632)
               

               
               ill (0.351185)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	125-268, gnl\|bosTau2\|chr22 (47590608-47590465)
	125-268, gnl\|Hg17\|chr3 (130373316-130373173)
	125-268, gnl\|Mm7\|chr6 (87920890-87920747)

	556-1633, gnl\|bosTau2\|chr22 (47589340-47588270)
	556-1633, gnl\|Hg17\|chr3 (130372114-130371044)
	556-1633, gnl\|Mm7\|chr6 (87919254-87918191)

	678-858, gnl\|bosTau2\|chr12 (23056568-23056394)
	678-858, gnl\|Hg17\|chr3 (130371993-130371813)
	678-858, gnl\|Mm7\|chr6 (87919131-87918952)

	tbr (4.9337)
	isp (3.90977)
	bfe (3.74644)
	vin (3.32557)
	fat (2.50627)
	ste (2.43375)
	mgp (2.30681)
	sag (2.19258)
	cbe (2.15311)
	sme (1.83262)
	ret (1.67353)
	ldo (1.55204)
	liv (1.46284)
	lun (1.3544)
	gul (1.24312)
	lyg (1.19792)
	aor (1.17165)
	mga (1.12144)
	tra (1.10783)
	ssp (1.08416)
	ova (1.03306)
	bla (0.994777)
	kid (0.908147)
	fty (0.879198)
	sin (0.874738)
	mas (0.84122)
	hea (0.817996)
	fco (0.78604)
	sug (0.763747)
	eep (0.735384)
	lin (0.728014)
	hlv (0.696282)
	rec (0.692281)
	nms (0.641574)
	thg (0.633955)
	ese (0.632511)
	tes (0.623441)
	pgl (0.592417)
	ski (0.586941)
	jca (0.569801)
	mgm (0.541028)
	nmm (0.531209)
	pro (0.512033)
	nje (0.49776)
	eru (0.480192)
	pan (0.471921)
	med (0.465008)
	spl (0.429553)
	hyp (0.42851)
	cty (0.41632)
	ill (0.351185)
	cki (0.330469)
	cli (0.305623)
	eje (0.296501)
	pty (0.285429)
	lnt (0.284616)
	csk (0.281492)
	cga (0.279096)
	nca (0.273748)
	ute (0.265569)
	cly (0.241284)
	ecc (0.23007)
	spc (0.226732)
	nbm (0.198649)
	fcc (0.197785)
	nlu (0.191681)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	cut (0.169924)
	csp (0.161186)
	eli (0.151814)
	che (0.136314)
	cov (0.132153)
	ebs (0.118301)
	cbl (0.114797)
	jej (0.0989218)