Non-Coding RNA Search

Ss1.1-rova010_d4.5

Sequence:


               
               GCAAATTCAAATTAAAAACTGGAACAGGGGGGAAGTTACCCCCCAAGCGCCCAGAACTCC
CCCCAACTCTAATGAGAATGAAGGATGAGCCTGAAGTAGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAAAGGAGGAGCAGGAAGGGAAGAAAGCGGAGGCTGGGAGGCTGCAGC
CGGAGCTGGTGCCAGAAGGAGCTGGGCAGGGAACGAGTCCTCCCGCAGATTTCACGTGTT
CTCAAGAAGCCAAAAACCGTGAAAACATGTGTCAACTCAGCCAAGTGGAACAGAATAAAG
ATTACCAAGAGATTGGTGGAACAGCTACATCGTGTGAGGAACCCTCAGCATCAAAGAATG
AATATGAGAAAAGCAGAGATGAATTGAAGAAAAAGAAAGCTCCTGGTGCAGGCAAACTTC
CACCGACACTTTCCTCCAAATATCCAGAAGATGACCCAGACTACTGTGTGTGGGTCCCAC
CTGAAGGCCAAAGTGGAGATGGCAGGACCCATCTTAATGACAAGTATGGCTATTGATTGG
TTCCGAATTCTAAAGGAAGACCTTGTGGACCATGTGACATGGGGTATTTAGCATAATATA
TCAAGTTCAGTGTCCAGAGAAGGAGTTCAGATGATCATTTGTAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATTCAAATTAAAAACTGGAACAGGGGGGAAGTTACCCCCCAAGCGCCCAGAACTCC
CCCCAACTCTAATGAGAATGAAGGATGAGCCTGAAGTAGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAAAGGAGGAGCAGGAAGGGAAGAAAGCGGAGGCTGGGAGGCTGCAGC
CGGAGCTGGTGCCAGAAGGAGCTGGGCAGGGAACGAGTCCTCCCGCAGATTTCACGTGTT
CTCAAGAAGCCAAAAACCGTGAAAACATGTGTCAACTCAGCCAAGTGGAACAGAATAAAG
ATTACCAAGAGATTGGTGGAACAGCTACATCGTGTGAGGAACCCTCAGCATCAAAGAATG
AATATGAGAAAAGCAGAGATGAATTGAAGAAAAAGAAAGCTCCTGGTGCAGGCAAACTTC
CACCGACACTTTCCTCCAAATATCCAGAAGATGACCCAGACTACTGTGTGTGGGTCCCAC
CTGAAGGCCAAAGTGGAGATGGCAGGACCCATCTTAATGACAAGTATGGCTATTGATTGG
TTCCGAATTCTAAAGGAAGACCTTGTGGACCATGTGACATGGGGTATTTAGCATAATATA
TCAAGTTCAGTGTCCAGAGAAGGAGTTCAGATGATCATTTGTAAAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               148-253, - strand, RNAz p=0.706939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-253, - strand, RNAz p=0.706939

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               32-253, gnl|bosTau2|chr11 (52161107-52161340)
               

               
               32-253, gnl|Hg17|chr2 (27819554-27819790)
               

               
               32-253, gnl|Mm7|chr5 (30576185-30576424)
               


               
               485-648, gnl|bosTau2|chr11 (52167367-52167530)
               

               
               485-648, gnl|Hg17|chr2 (27829150-27829310)
               

               
               485-648, gnl|Mm7|chr5 (30586253-30586401)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-253, gnl|bosTau2|chr11 (52161107-52161340)
               

               
               32-253, gnl|Hg17|chr2 (27819554-27819790)
               

               
               32-253, gnl|Mm7|chr5 (30576185-30576424)
               


               
               485-648, gnl|bosTau2|chr11 (52167367-52167530)
               

               
               485-648, gnl|Hg17|chr2 (27829150-27829310)
               

               
               485-648, gnl|Mm7|chr5 (30586253-30586401)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               nep (0.183925)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

	32-253, gnl\|bosTau2\|chr11 (52161107-52161340)
	32-253, gnl\|Hg17\|chr2 (27819554-27819790)
	32-253, gnl\|Mm7\|chr5 (30576185-30576424)

	485-648, gnl\|bosTau2\|chr11 (52167367-52167530)
	485-648, gnl\|Hg17\|chr2 (27829150-27829310)
	485-648, gnl\|Mm7\|chr5 (30586253-30586401)

	sme (0.305437)
	nep (0.183925)
	bfe (0.149858)
	liv (0.146284)
	hlv (0.139256)
	ova (0.129132)
	ese (0.126502)