Ss1.1-rova011_j7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCAAAGAAAGGCAAGGGGGACAGCACCAACGCTGATGATGCCAGCGACCCAACCACTAA AGAGTTTGAAACTTTAATTAAAGACCTGTCAGCTGAGAATGGTTTGGAAGGCTTCATATT ACGCACCTCCTCAAATCTGGCTCTTTATCGATACCATTCGTACAAGGACTTATCAGAGTT TCTGAGAGGACTTGTGATGAACTATCCACATATTACAAATCTTACCAATTTGGGACAGAG TGCTGAATACCGTCACATTTGGTCCCTTGAAATCTCCAATAAGCCCAATGTATCTGAGCC TGAAGAACCAAAGATTCGTTTTGTTGCTGGTATCCATGGAAATGCTCCAGTTGGAACTGA ACTGCTTTTGGCTCTGGCAGAATTTCTCTGCCTAAACTACAAAAAGAACCCAGCTGTTAC CCAATTGGTTGACAGGACTAGAATTGTGATTGTCCCTTCTCTAAATCCAGATGGGCGAGA GAGAGCTCAGGAGAAAGACTGTACTTCAAAGATAGGACAGACAAATGCTCGTGGAAAAGA CCTGGATACAGACTTCACAAATAATGCCTCCCAGCCTGAGACTAAAGCCATCATTGAAAA TTTGATTCAGAAACAGGACTTTAGTCTTTCTGTTGCTTTAGATGGTGGTTCAGTGCTGGT CACATACCCATATGACAAGCCAGTTCAAACAGTGGAAAACAAAGAGACTCTGAAGCATTT GGCATCTCTTTATGCAAATAATCATCCATCGATGCATATGGGTCAGCCAAGTTGCCCAAA TAAATCAGATGAGAATATTCCAGGAGGAGTAATGCGTGGAGCAGAATGGCACAGTCACCT GGGCAGCATGAAGGATTATAGCGTTACCTATGGCCACTGTCCGGAAATCACAGTATACAC AAGCTGCTGCTACTTTCCTAGCGCAGCCCAGCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCAAAGAAAGGCAAGGGGGACAGCACCAACGCTGATGATGCCAGCGACCCAACCACTAA AGAGTTTGAAACTTTAATTAAAGACCTGTCAGCTGAGAATGGTTTGGAAGGCTTCATATT ACGCACCTCCTCAAATCTGGCTCTTTATCGATACCATTCGTACAAGGACTTATCAGAGTT TCTGAGAGGACTTGTGATGAACTATCCACATATTACAAATCTTACCAATTTGGGACAGAG TGCTGAATACCGTCACATTTGGTCCCTTGAAATCTCCAATAAGCCCAATGTATCTGAGCC TGAAGAACCAAAGATTCGTTTTGTTGCTGGTATCCATGGAAATGCTCCAGTTGGAACTGA ACTGCTTTTGGCTCTGGCAGAATTTCTCTGCCTAAACTACAAAAAGAACCCAGCTGTTAC CCAATTGGTTGACAGGACTAGAATTGTGATTGTCCCTTCTCTAAATCCAGATGGGCGAGA GAGAGCTCAGGAGAAAGACTGTACTTCAAAGATAGGACAGACAAATGCTCGTGGAAAAGA CCTGGATACAGACTTCACAAATAATGCCTCCCAGCCTGAGACTAAAGCCATCATTGAAAA TTTGATTCAGAAACAGGACTTTAGTCTTTCTGTTGCTTTAGATGGTGGTTCAGTGCTGGT CACATACCCATATGACAAGCCAGTTCAAACAGTGGAAAACAAAGAGACTCTGAAGCATTT GGCATCTCTTTATGCAAATAATCATCCATCGATGCATATGGGTCAGCCAAGTTGCCCAAA TAAATCAGATGAGAATATTCCAGGAGGAGTAATGCGTGGAGCAGAATGGCACAGTCACCT GGGCAGCATGAAGGATTATAGCGTTACCTATGGCCACTGTCCGGAAATCACAGTATACAC AAGCTGCTGCTACTTTCCTAGCGCAGCCCAGCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 320-424, - strand, RNAz p=0.75613 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 320-424, - strand, RNAz p=0.75613 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 226-424, gnl|bosTau2|chr19 (15928860-15928662) | |
| 226-424, gnl|canFam2|chr9 (47778515-47778751) | |
| 226-424, gnl|danRer3|chr15 (31894349-31894106) | |
| 226-424, gnl|dasNov1|scaffold_206537 (1122-888) | |
| 226-424, gnl|echTel1|scaffold_288019 (3873-3630) | |
| 226-424, gnl|fr1|chrUn (190769530-190769310) | |
| 226-424, gnl|galGal2|chr19 (5844252-5844472) | |
| 226-424, gnl|hg17|chr17 (25800659-25800903) | |
| 226-424, gnl|Hg17|chr17 (25800694-25800892) | |
| 226-424, gnl|loxAfr1|scaffold_4002 (16625-16380) | |
| 226-424, gnl|mm7|chr11 (76877249-76877007) | |
| 226-424, gnl|Mm7|chr11 (76877214-76877016) | |
| 226-424, gnl|monDom2|scaffold_86 (895610-895851) | |
| 226-424, gnl|oryCun1|scaffold_179807 (8571-8814) | |
| 226-424, gnl|panTro1|chr19 (29162971-29163215) | |
| 226-424, gnl|rheMac2|chr16 (25692793-25693037) | |
| 226-424, gnl|rn3|chr10 (67389630-67389872) | |
| 226-424, gnl|tetNig1|chr10 (10082301-10082079) | |
| 226-424, gnl|xenTro1|scaffold_67 (2678778-2679026) | |
| 425-564, gnl|bosTau2|chr19 (15926122-15925983) | |
| 425-564, gnl|canFam2|chr9 (47781215-47781382) | |
| 425-564, gnl|danRer3|chr15 (31891230-31891080) | |
| 425-564, gnl|dasNov1|scaffold_21840 (8541-8714) | |
| 425-564, gnl|echTel1|scaffold_288019 (1117-936) | |
| 425-564, gnl|fr1|chrUn (190769101-190768934) | |
| 425-564, gnl|galGal2|chr19 (5844696-5844886) | |
| 425-564, gnl|hg17|chr17 (25802824-25803004) | |
| 425-564, gnl|Hg17|chr17 (25802855-25802994) | |
| 425-564, gnl|loxAfr1|scaffold_4002 (13915-13734) | |
| 425-564, gnl|mm7|chr11 (76874478-76874299) | |
| 425-564, gnl|Mm7|chr11 (76874446-76874307) | |
| 425-564, gnl|monDom2|scaffold_86 (897670-897844) | |
| 425-564, gnl|oryCun1|scaffold_144852 (7264-7433) | |
| 425-564, gnl|panTro1|chr19 (29166143-29166323) | |
| 425-564, gnl|rheMac2|chr16 (25695175-25695355) | |
| 425-564, gnl|rn3|chr10 (67395179-67395358) | |
| 425-564, gnl|tetNig1|chr10 (10081927-10081765) | |
| 425-564, gnl|xenTro1|scaffold_67 (2679835-2680017) | |
| 691-801, gnl|bosTau2|chr19 (15969358-15969468) | |
| 691-801, gnl|canFam2|chr9 (47783340-47783483) | |
| 691-801, gnl|danRer3|chr15 (31890717-31890580) | |
| 691-801, gnl|dasNov1|scaffold_21840 (10382-10525) | |
| 691-801, gnl|fr1|chrUn (190768286-190768128) | |
| 691-801, gnl|galGal2|chr19 (5846203-5846335) | |
| 691-801, gnl|hg17|chr17 (25807373-25807517) | |
| 691-801, gnl|Hg17|chr17 (25807398-25807508) | |
| 691-801, gnl|loxAfr1|scaffold_4002 (10768-10625) | |
| 691-801, gnl|mm7|chr11 (76872695-76872550) | |
| 691-801, gnl|Mm7|chr11 (76872667-76872557) | |
| 691-801, gnl|monDom2|scaffold_86 (902373-902504) | |
| 691-801, gnl|panTro1|chr19 (29170926-29171070) | |
| 691-801, gnl|rheMac2|chr16 (25700076-25700220) | |
| 691-801, gnl|rn3|chr10 (67396484-67396628) | |
| 691-801, gnl|tetNig1|chr10 (10081283-10081150) | |
| 691-801, gnl|xenTro1|scaffold_67 (2681773-2681904) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-424, gnl|bosTau2|chr19 (15928860-15928662) | |
| 226-424, gnl|canFam2|chr9 (47778515-47778751) | |
| 226-424, gnl|danRer3|chr15 (31894349-31894106) | |
| 226-424, gnl|dasNov1|scaffold_206537 (1122-888) | |
| 226-424, gnl|echTel1|scaffold_288019 (3873-3630) | |
| 226-424, gnl|fr1|chrUn (190769530-190769310) | |
| 226-424, gnl|galGal2|chr19 (5844252-5844472) | |
| 226-424, gnl|hg17|chr17 (25800659-25800903) | |
| 226-424, gnl|Hg17|chr17 (25800694-25800892) | |
| 226-424, gnl|loxAfr1|scaffold_4002 (16625-16380) | |
| 226-424, gnl|mm7|chr11 (76877249-76877007) | |
| 226-424, gnl|Mm7|chr11 (76877214-76877016) | |
| 226-424, gnl|monDom2|scaffold_86 (895610-895851) | |
| 226-424, gnl|oryCun1|scaffold_179807 (8571-8814) | |
| 226-424, gnl|panTro1|chr19 (29162971-29163215) | |
| 226-424, gnl|rheMac2|chr16 (25692793-25693037) | |
| 226-424, gnl|rn3|chr10 (67389630-67389872) | |
| 226-424, gnl|tetNig1|chr10 (10082301-10082079) | |
| 226-424, gnl|xenTro1|scaffold_67 (2678778-2679026) | |
| 425-564, gnl|bosTau2|chr19 (15926122-15925983) | |
| 425-564, gnl|canFam2|chr9 (47781215-47781382) | |
| 425-564, gnl|danRer3|chr15 (31891230-31891080) | |
| 425-564, gnl|dasNov1|scaffold_21840 (8541-8714) | |
| 425-564, gnl|echTel1|scaffold_288019 (1117-936) | |
| 425-564, gnl|fr1|chrUn (190769101-190768934) | |
| 425-564, gnl|galGal2|chr19 (5844696-5844886) | |
| 425-564, gnl|hg17|chr17 (25802824-25803004) | |
| 425-564, gnl|Hg17|chr17 (25802855-25802994) | |
| 425-564, gnl|loxAfr1|scaffold_4002 (13915-13734) | |
| 425-564, gnl|mm7|chr11 (76874478-76874299) | |
| 425-564, gnl|Mm7|chr11 (76874446-76874307) | |
| 425-564, gnl|monDom2|scaffold_86 (897670-897844) | |
| 425-564, gnl|oryCun1|scaffold_144852 (7264-7433) | |
| 425-564, gnl|panTro1|chr19 (29166143-29166323) | |
| 425-564, gnl|rheMac2|chr16 (25695175-25695355) | |
| 425-564, gnl|rn3|chr10 (67395179-67395358) | |
| 425-564, gnl|tetNig1|chr10 (10081927-10081765) | |
| 425-564, gnl|xenTro1|scaffold_67 (2679835-2680017) | |
| 691-801, gnl|bosTau2|chr19 (15969358-15969468) | |
| 691-801, gnl|canFam2|chr9 (47783340-47783483) | |
| 691-801, gnl|danRer3|chr15 (31890717-31890580) | |
| 691-801, gnl|dasNov1|scaffold_21840 (10382-10525) | |
| 691-801, gnl|fr1|chrUn (190768286-190768128) | |
| 691-801, gnl|galGal2|chr19 (5846203-5846335) | |
| 691-801, gnl|hg17|chr17 (25807373-25807517) | |
| 691-801, gnl|Hg17|chr17 (25807398-25807508) | |
| 691-801, gnl|loxAfr1|scaffold_4002 (10768-10625) | |
| 691-801, gnl|mm7|chr11 (76872695-76872550) | |
| 691-801, gnl|Mm7|chr11 (76872667-76872557) | |
| 691-801, gnl|monDom2|scaffold_86 (902373-902504) | |
| 691-801, gnl|panTro1|chr19 (29170926-29171070) | |
| 691-801, gnl|rheMac2|chr16 (25700076-25700220) | |
| 691-801, gnl|rn3|chr10 (67396484-67396628) | |
| 691-801, gnl|tetNig1|chr10 (10081283-10081150) | |
| 691-801, gnl|xenTro1|scaffold_67 (2681773-2681904) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| ova (0.129132) | |
| eru (0.120048) |