Non-Coding RNA Search

Ss1.1-rova012_b16.5

Sequence:


               
               CTTGATTTCACACACCCTGTGCCTAGTGATAAGCTGATTCCAAAGAAGGATCTGGACAGG
GAGCACGAACAAGTTAAGTGTTTAAAAGTCCCCAGGAATTCCCACTGTGCCTCAGTGGGT
TAAGAACCTGACTAGTATCCATGAGAATGTGGGTTCAAACCCTGGCCTCGCTCAGTGGTA
AAGGATCTGGCGTTGCCGAAAGCTGTGGTATAGGTCTCAGACACGGCTCAGATCCCAAGT
TGCTGTGGCTGTGGTGTAGGCCAGCAGGTAGAGCTCTGATTCCACCTCTAGCCTGGGAAC
CTCCATATGCCTCGGGTGCACCTGTAAAAATAAGGGGGAAAAAAGTCTCCAAAAGTTAAG
CTAAGTGCCTCAATTTTCCCTCTCACTTCAACTGAAAGTGTTTTTCAGTTTGTCCTATGG
AAGCTCCCATTCTCTTTAAATGATATTCTCCAAGTACAACTGGTACTAAAATATTTCCTC
TTCCTACTTCCTGAACTCATCATTTCAAATGTGTATTTGGGGGCTAGAACTGAGGGGAAC
CAGCTCTGATCTCTCTCACCCAGCTTCCAAAACAATGTGCTCCAGGGAATAGGGACTTCG
GCCTTGGGAAGGTGACCCTTCCGAATGTCCAGGGATTCTTGTATCTCAGAGTTATTTCCT
GGCTTTTAATTAGAGAGTCTGAAGACTTCTAATTAGTTTTATCTGCTTCCAATTTCCCTG
TAAATAGCCAGGTAGGCACTTGGTTTTTTTATTTCAACGGCATAAGCAAAATGTCTCTTT
GCAACATGGAATTACACCAATTTTAGTTTAAGAATTTCCAGATTTACACTCTTGTTAGAA
AAAATATGCTAGTTTCTTCTGCTGCTGGAAGAATTGCACGAAAAAAAAAAGTATGTGGTG
TGGGTCTTTTCTATTAAGACCTTTCATGATACTCCCTCAGTTTGGGGGTGGGGGGAGGTA
GTTTGTTTGCTTTTAATTTCTGAAATATGTTTTCCCTTCTACATTTCAAATTTTATTTTC
TTTCTACCCCATCTAGTTGCTAAACATTTTCTTAAACACACACACACACATCCCTAAAAA
CGGGAGTTTTGTAAGTCAAAGCTTGACATTAAGAGAAAACAAGGACTTTCTCTCTTTGTA
AGTGGAAATAAACCATGTATAAACTAACTCTGCACAGGTTATGAATTCACCCTTTACAAA
CAATAATGAGCTTTTAGCCCAGTAATAAATGAAATGCCGTTAGCTGGTTTTGTTACATTA
CTGTGTGGTTACGTCTTGCTAAAGAGCCACTCCTCACTTCTCATTGGTGTGGGTGACAAA
TTGAGGGCAGTCTGTTTGCTCTGCCGAGGAGAATTCCCCAGAGTGTGCACTCCACGGGCC
GATGGCTCCTCAGACCTTCGCCTCCCTAATGGGCCATAGGGATTAACTTGTTCACAGTGG
GAAGATCACTCTCTTGCCCGGAACCAGAACCTGGAGAGAGATGCTTGGGGTTGGGGTAGA
ACCCCGGCTCTTACCTGCCTTAGGCGCTAACTGTTGAATAAAATAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGATTTCACACACCCTGTGCCTAGTGATAAGCTGATTCCAAAGAAGGATCTGGACAGG
GAGCACGAACAAGTTAAGTGTTTAAAAGTCCCCAGGAATTCCCACTGTGCCTCAGTGGGT
TAAGAACCTGACTAGTATCCATGAGAATGTGGGTTCAAACCCTGGCCTCGCTCAGTGGTA
AAGGATCTGGCGTTGCCGAAAGCTGTGGTATAGGTCTCAGACACGGCTCAGATCCCAAGT
TGCTGTGGCTGTGGTGTAGGCCAGCAGGTAGAGCTCTGATTCCACCTCTAGCCTGGGAAC
CTCCATATGCCTCGGGTGCACCTGTAAAAATAAGGGGGAAAAAAGTCTCCAAAAGTTAAG
CTAAGTGCCTCAATTTTCCCTCTCACTTCAACTGAAAGTGTTTTTCAGTTTGTCCTATGG
AAGCTCCCATTCTCTTTAAATGATATTCTCCAAGTACAACTGGTACTAAAATATTTCCTC
TTCCTACTTCCTGAACTCATCATTTCAAATGTGTATTTGGGGGCTAGAACTGAGGGGAAC
CAGCTCTGATCTCTCTCACCCAGCTTCCAAAACAATGTGCTCCAGGGAATAGGGACTTCG
GCCTTGGGAAGGTGACCCTTCCGAATGTCCAGGGATTCTTGTATCTCAGAGTTATTTCCT
GGCTTTTAATTAGAGAGTCTGAAGACTTCTAATTAGTTTTATCTGCTTCCAATTTCCCTG
TAAATAGCCAGGTAGGCACTTGGTTTTTTTATTTCAACGGCATAAGCAAAATGTCTCTTT
GCAACATGGAATTACACCAATTTTAGTTTAAGAATTTCCAGATTTACACTCTTGTTAGAA
AAAATATGCTAGTTTCTTCTGCTGCTGGAAGAATTGCACGAAAAAAAAAAGTATGTGGTG
TGGGTCTTTTCTATTAAGACCTTTCATGATACTCCCTCAGTTTGGGGGTGGGGGGAGGTA
GTTTGTTTGCTTTTAATTTCTGAAATATGTTTTCCCTTCTACATTTCAAATTTTATTTTC
TTTCTACCCCATCTAGTTGCTAAACATTTTCTTAAACACACACACACACATCCCTAAAAA
CGGGAGTTTTGTAAGTCAAAGCTTGACATTAAGAGAAAACAAGGACTTTCTCTCTTTGTA
AGTGGAAATAAACCATGTATAAACTAACTCTGCACAGGTTATGAATTCACCCTTTACAAA
CAATAATGAGCTTTTAGCCCAGTAATAAATGAAATGCCGTTAGCTGGTTTTGTTACATTA
CTGTGTGGTTACGTCTTGCTAAAGAGCCACTCCTCACTTCTCATTGGTGTGGGTGACAAA
TTGAGGGCAGTCTGTTTGCTCTGCCGAGGAGAATTCCCCAGAGTGTGCACTCCACGGGCC
GATGGCTCCTCAGACCTTCGCCTCCCTAATGGGCCATAGGGATTAACTTGTTCACAGTGG
GAAGATCACTCTCTTGCCCGGAACCAGAACCTGGAGAGAGATGCTTGGGGTTGGGGTAGA
ACCCCGGCTCTTACCTGCCTTAGGCGCTAACTGTTGAATAAAATAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               638-793, - strand, RNAz p=0.604145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               638-793, - strand, RNAz p=0.604145

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               330-1282, gnl|bosTau2|chr10 (49116001-49116962)
               

               
               330-1282, gnl|Hg17|chr14 (62828528-62829712)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               330-1282, gnl|bosTau2|chr10 (49116001-49116962)
               

               
               330-1282, gnl|Hg17|chr14 (62828528-62829712)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	330-1282, gnl\|bosTau2\|chr10 (49116001-49116962)
	330-1282, gnl\|Hg17\|chr14 (62828528-62829712)

	hea (0.204499)
	cmu (0.186393)
	sto (0.179824)
	rec (0.17307)
	fat (0.147427)
	lnt (0.142308)
	cst (0.140036)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)