Non-Coding RNA Search

Ss1.1-rova012_h16.5

Sequence:


               
               TCTTAAATTTCTAAGTTCATCCAGTAAGTGAAATATTTAAAGGGTAAGAGGAAGTATTAC
ATAGTACCATAGATAATAATTTGTAAAACTCTAGAAGCCTTTATTTGGTCCTACTTACAA
CTTAGCCTCTTAAAAATGTGTGGCTTCTGTCTGTCATTTCTTTGAATAACTAAAACATGA
AGACAAACAAAAAACCAGAGCTATCTGAATATAAAAAAAGTTAATCCTCTTTCAAAGAAA
ATTCTTCTTGTGAATTCTCTTTATACTGGTAAATATCTCTAGAATTAAGGGCATACTCAG
ATTGACCTCAGTGTGTCTACTCTGTCTTCCCTGTACTTTTCTTATTGATGAAGTATAAAA
TTTGAATCTAGTTTCTCTGGAAATGTTTTCACAAAAGATAATTCAATTGACATTTTGTAT
TGCCTTTCCAATTCCAGAAGTGCTTTTAAGCTTAGAAAGTGACCTATAGTTTTTGGAAAT
TATGGTTTCCTAGAATATGCCAGATTTTTATTTTATTCACTCTAAAAAAATGTTCAGTAC
CTTTTTTCCCAGATGTATTGCATCTGTTTAGAGCAAAATGCAATACAGTGTTTAAAGAAA
CATGCATCTCTTAAGTTGGCCCAAGATCAAATTCATTATTGAATAAATTATTCCGGGCAA
GATTTTACAAGTTAAACTCCTATGTTTCTTTGCATACATGTTGTTTTGAAATATTTCTAA
ATATCTAAAATAATTTCAGCAACAGGAGTATGAATTGATTTTTTAAAAAAGATTGTTGCA
GCTCTTGTACTGTTTAAAAGTGGTAATATTTATCACTTGCTTGGGTCAGACGTTAAAATA
GCAGTATAGCAGTTCAGCCTTAGTGCTGTTATGAAAGTCACAGTGAAAACTTCAGAGAGC
TGACATGTTCATAAAAACCAGATTAAATCTAGGGCAGCATCACATGAAGCCACATGTAAT
GATCATCCCATAAGGAAAGTATGTGAATACTGCTTTTGCAAAGGATAAAATATATTATTG
TAATTTTAGCTTGTGCTCTATACTGTGCTTTCAACGGAATTATTTAAGCCCTTTTAGTGA
CTGTTGTCCTTAGCCATCTAAAAACTGAAGTGTAGAATATATTGTATAAAATAAAAGTAT
CATTGCTTAATTAGGAAAATTGTACATAGACATTGAAAGAAGGGTTAAAAACAGGCAATT
TTATTATGCAATTGTAAAACACCAAAAATATAGATTCATCTTTGATATATGTAACACACT
AAATGTATTTTGTACAGCATCTGGTTTAAAAGGTGCCTTATTAAGTTTATCATTAATTGC
TTTGTTCTATATATAGATTACATCCAATGTATCATTTTTAAGTAAATAACCTTATTTTAG
TATACTTTAGTGATGTGTTTTGTGATACTCTACTTGGACTATATTGTGTATCAGAAGTCA
TGGGTCTGGTGAAATTTTGTAACTGTTACGTTAGGGTATATACAAAATGTTCCTGAGATA
TGTATTTCAGTTACCAGAAAGCCAGTATGGGACACAGGACGGGTAAGTGACCACATACTC
TTTCCTTTGTGTAGATAGAGAAGTTATAAATCCATCATAGCAAAGAGTTGTTTTCCTTTA
AAAAAAGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAAATTTCTAAGTTCATCCAGTAAGTGAAATATTTAAAGGGTAAGAGGAAGTATTAC
ATAGTACCATAGATAATAATTTGTAAAACTCTAGAAGCCTTTATTTGGTCCTACTTACAA
CTTAGCCTCTTAAAAATGTGTGGCTTCTGTCTGTCATTTCTTTGAATAACTAAAACATGA
AGACAAACAAAAAACCAGAGCTATCTGAATATAAAAAAAGTTAATCCTCTTTCAAAGAAA
ATTCTTCTTGTGAATTCTCTTTATACTGGTAAATATCTCTAGAATTAAGGGCATACTCAG
ATTGACCTCAGTGTGTCTACTCTGTCTTCCCTGTACTTTTCTTATTGATGAAGTATAAAA
TTTGAATCTAGTTTCTCTGGAAATGTTTTCACAAAAGATAATTCAATTGACATTTTGTAT
TGCCTTTCCAATTCCAGAAGTGCTTTTAAGCTTAGAAAGTGACCTATAGTTTTTGGAAAT
TATGGTTTCCTAGAATATGCCAGATTTTTATTTTATTCACTCTAAAAAAATGTTCAGTAC
CTTTTTTCCCAGATGTATTGCATCTGTTTAGAGCAAAATGCAATACAGTGTTTAAAGAAA
CATGCATCTCTTAAGTTGGCCCAAGATCAAATTCATTATTGAATAAATTATTCCGGGCAA
GATTTTACAAGTTAAACTCCTATGTTTCTTTGCATACATGTTGTTTTGAAATATTTCTAA
ATATCTAAAATAATTTCAGCAACAGGAGTATGAATTGATTTTTTAAAAAAGATTGTTGCA
GCTCTTGTACTGTTTAAAAGTGGTAATATTTATCACTTGCTTGGGTCAGACGTTAAAATA
GCAGTATAGCAGTTCAGCCTTAGTGCTGTTATGAAAGTCACAGTGAAAACTTCAGAGAGC
TGACATGTTCATAAAAACCAGATTAAATCTAGGGCAGCATCACATGAAGCCACATGTAAT
GATCATCCCATAAGGAAAGTATGTGAATACTGCTTTTGCAAAGGATAAAATATATTATTG
TAATTTTAGCTTGTGCTCTATACTGTGCTTTCAACGGAATTATTTAAGCCCTTTTAGTGA
CTGTTGTCCTTAGCCATCTAAAAACTGAAGTGTAGAATATATTGTATAAAATAAAAGTAT
CATTGCTTAATTAGGAAAATTGTACATAGACATTGAAAGAAGGGTTAAAAACAGGCAATT
TTATTATGCAATTGTAAAACACCAAAAATATAGATTCATCTTTGATATATGTAACACACT
AAATGTATTTTGTACAGCATCTGGTTTAAAAGGTGCCTTATTAAGTTTATCATTAATTGC
TTTGTTCTATATATAGATTACATCCAATGTATCATTTTTAAGTAAATAACCTTATTTTAG
TATACTTTAGTGATGTGTTTTGTGATACTCTACTTGGACTATATTGTGTATCAGAAGTCA
TGGGTCTGGTGAAATTTTGTAACTGTTACGTTAGGGTATATACAAAATGTTCCTGAGATA
TGTATTTCAGTTACCAGAAAGCCAGTATGGGACACAGGACGGGTAAGTGACCACATACTC
TTTCCTTTGTGTAGATAGAGAAGTTATAAATCCATCATAGCAAAGAGTTGTTTTCCTTTA
AAAAAAGGGGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               26-1622, gnl|bosTau2|chr28 (31955001-31956575)
               

               
               26-1622, gnl|Hg17|chr10 (88676346-88677928)
               

               
               26-1622, gnl|Mm7|chr14 (31845649-31844178)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1622, gnl|bosTau2|chr28 (31955001-31956575)
               

               
               26-1622, gnl|Hg17|chr10 (88676346-88677928)
               

               
               26-1622, gnl|Mm7|chr14 (31845649-31844178)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               ret (1.02987)
               

               
               aor (0.781097)
               

               
               fco (0.471624)
               

               
               sag (0.36543)
               

               
               cty (0.31224)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.02987)
               

               
               aor (0.781097)
               

               
               fco (0.471624)
               

               
               sag (0.36543)
               

               
               cty (0.31224)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	26-1622, gnl\|bosTau2\|chr28 (31955001-31956575)
	26-1622, gnl\|Hg17\|chr10 (88676346-88677928)
	26-1622, gnl\|Mm7\|chr14 (31845649-31844178)

	ret (1.02987)
	aor (0.781097)
	fco (0.471624)
	sag (0.36543)
	cty (0.31224)
	mgp (0.230681)
	fbs (0.175346)
	rec (0.17307)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	nbm (0.0993246)