Non-Coding RNA Search

Ss1.1-rova012_h4.5

Sequence:


               
               GTTTTTGATGATTGGTTTTAAATAAACAACACAAGAACTATATAATACATAAATTATTTG
TTTTTCAGTAGGTTTGTGTATCATGTAAAGATCATAGTTTATTTCAGTGGTATCATTTGA
TGTAACAATTTGTATGACAAACCAACTGTATTTTATTCAAAGGTACCTGTAAATTATAAA
TCTTCTAATGTCCAATTGCTGGAATTTGTGACGGTTGATTTATAACTAACTCATGAAAAT
CTCCATATGTTTGATATTTCACTTAATTAGTGCTTCTGCAATAATAACAACAAAATGATA
TTAAAATACATTTGTTTTGTGTGCCGATCCTGTGGCTAGAAGACAGAATTAGAAGATAAA
ATTTTTGAATAACGAGGCCCCTCTGCGCAAAACATTTTGATTTCATAGTATTAAAGTAGG
GATTTTAATCATTGAAGACAATACTGAGTTCTATAGAGTCACACATACAGTGTAGTCTTT
TAGTGTTTTAATCACTGTACAATGAATGCCATATGTGTACATGTATTTGTATATGTAATC
GCACTGTTGATTTTATTGCGCTTATAAATGTGTGTTACTATGAAACAGCAGCAATTTCCC
TTTAAGTCTTCAAATTTTAATTACATTATAAATGTACTTCAAATGTAAATGTACTTGCAT
TAATTCCACATTAAAAAATCCAACCTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTGATGATTGGTTTTAAATAAACAACACAAGAACTATATAATACATAAATTATTTG
TTTTTCAGTAGGTTTGTGTATCATGTAAAGATCATAGTTTATTTCAGTGGTATCATTTGA
TGTAACAATTTGTATGACAAACCAACTGTATTTTATTCAAAGGTACCTGTAAATTATAAA
TCTTCTAATGTCCAATTGCTGGAATTTGTGACGGTTGATTTATAACTAACTCATGAAAAT
CTCCATATGTTTGATATTTCACTTAATTAGTGCTTCTGCAATAATAACAACAAAATGATA
TTAAAATACATTTGTTTTGTGTGCCGATCCTGTGGCTAGAAGACAGAATTAGAAGATAAA
ATTTTTGAATAACGAGGCCCCTCTGCGCAAAACATTTTGATTTCATAGTATTAAAGTAGG
GATTTTAATCATTGAAGACAATACTGAGTTCTATAGAGTCACACATACAGTGTAGTCTTT
TAGTGTTTTAATCACTGTACAATGAATGCCATATGTGTACATGTATTTGTATATGTAATC
GCACTGTTGATTTTATTGCGCTTATAAATGTGTGTTACTATGAAACAGCAGCAATTTCCC
TTTAAGTCTTCAAATTTTAATTACATTATAAATGTACTTCAAATGTAAATGTACTTGCAT
TAATTCCACATTAAAAAATCCAACCTTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               581-690, - strand, RNAz p=0.525447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               581-690, - strand, RNAz p=0.525447

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-690, gnl|bosTau2|chrX (6545212-6544529)
               

               
               1-690, gnl|Hg17|chrX (138382702-138382029)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-690, gnl|bosTau2|chrX (6545212-6544529)
               

               
               1-690, gnl|Hg17|chrX (138382702-138382029)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               tra (0.123092)

	1-690, gnl\|bosTau2\|chrX (6545212-6544529)
	1-690, gnl\|Hg17\|chrX (138382702-138382029)