Ss1.1-rova012_i20.5
|
TTTTTCAGATTTTCTTAAAAAGCTTAAAGATTTTGATCTGACAATCTACTTCAAGAAATC
TCAGAAGATAATGATACATTTTTACTTTTAACTTAAAGCATTGTTTGGTCATCATCTTTC
ATTACCTGAAGTGCCAGGTTGGAACCTATAGCTACTGCTCAAAGTCTTAAGGGCAACAGC
ATCACATGATGCATTAAGAATTATATGCAGCCAGGTTTTTTGTTGTTTTTTTTTTTCAAA
GCACAGTGCTAGAGCTGTTTTTAGACAGGATTCTGTTAGGTATCCCCTCCTAACAAACTA
GAAGCTAGGGGGAAAGGTGGGATTTTTATGCTTTACCTTGCCAGAATACTGTTACCCCAC
CCCCACCCCTACCTGTTAGCTCTCTTCATGTACTTATTGAAATACATAAATCAATACACA
TTAGGAACAGATTTAAAAACATTTTTTAAAATAAAGTTTTTTCCATTAAGTTGTAATGGT
TCCCTTTTTGGTTTCATACAGTGACTCATCTTTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTCAGATTTTCTTAAAAAGCTTAAAGATTTTGATCTGACAATCTACTTCAAGAAATC
TCAGAAGATAATGATACATTTTTACTTTTAACTTAAAGCATTGTTTGGTCATCATCTTTC
ATTACCTGAAGTGCCAGGTTGGAACCTATAGCTACTGCTCAAAGTCTTAAGGGCAACAGC
ATCACATGATGCATTAAGAATTATATGCAGCCAGGTTTTTTGTTGTTTTTTTTTTTCAAA
GCACAGTGCTAGAGCTGTTTTTAGACAGGATTCTGTTAGGTATCCCCTCCTAACAAACTA
GAAGCTAGGGGGAAAGGTGGGATTTTTATGCTTTACCTTGCCAGAATACTGTTACCCCAC
CCCCACCCCTACCTGTTAGCTCTCTTCATGTACTTATTGAAATACATAAATCAATACACA
TTAGGAACAGATTTAAAAACATTTTTTAAAATAAAGTTTTTTCCATTAAGTTGTAATGGT
TCCCTTTTTGGTTTCATACAGTGACTCATCTTTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-137, gnl|bosTau2|chr27 (12706688-12706560) |
|
1-137, gnl|Hg17|chr8 (17123643-17123799) |
|
1-137, gnl|Mm7|chr8 (39275809-39275959) |
| |
|
162-516, gnl|bosTau2|chr27 (12706559-12706230) |
|
162-516, gnl|canFam2|chr16 (43507857-43508423) |
|
162-516, gnl|hg17|chr8 (17123777-17124358) |
|
162-516, gnl|Hg17|chr8 (17123800-17124136) |
|
162-516, gnl|loxAfr1|scaffold_55914 (8389-8964) |
|
162-516, gnl|mm7|chr8 (39275937-39276503) |
|
162-516, gnl|Mm7|chr8 (39275960-39276289) |
|
162-516, gnl|oryCun1|scaffold_198473 (12992-13559) |
|
162-516, gnl|panTro1|chr7 (17883415-17883991) |
|
162-516, gnl|rheMac2|chr8 (17091566-17092127) |
|
162-516, gnl|rn3|chr16 (55154104-55153565) |
|
162-516, gnl|xenTro1|scaffold_329 (650210-649613) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-137, gnl|bosTau2|chr27 (12706688-12706560) |
|
1-137, gnl|Hg17|chr8 (17123643-17123799) |
|
1-137, gnl|Mm7|chr8 (39275809-39275959) |
| |
|
162-516, gnl|bosTau2|chr27 (12706559-12706230) |
|
162-516, gnl|canFam2|chr16 (43507857-43508423) |
|
162-516, gnl|hg17|chr8 (17123777-17124358) |
|
162-516, gnl|Hg17|chr8 (17123800-17124136) |
|
162-516, gnl|loxAfr1|scaffold_55914 (8389-8964) |
|
162-516, gnl|mm7|chr8 (39275937-39276503) |
|
162-516, gnl|Mm7|chr8 (39275960-39276289) |
|
162-516, gnl|oryCun1|scaffold_198473 (12992-13559) |
|
162-516, gnl|panTro1|chr7 (17883415-17883991) |
|
162-516, gnl|rheMac2|chr8 (17091566-17092127) |
|
162-516, gnl|rn3|chr16 (55154104-55153565) |
|
162-516, gnl|xenTro1|scaffold_329 (650210-649613) |
|
ova (0.129132) |
|
tra (0.123092) |
|
spc (0.113366) |
|
ova (0.129132) |
|
tra (0.123092) |
|
spc (0.113366) |
