Non-Coding RNA Search

Ss1.1-rova012_k14.5

Sequence:


               
               CTTCCCATTTTTACTCTCCCTGAGCAACATGTAAGTGAGTATTCAAAAGGTGCAGATGTC
CTGTCTTTTGCACTTGAGCCAGCTGAAACATATGTTTGGGGACAACCCTCCCTGGGGACC
TGTCTGAGTAACTGTGTCTCCTCTTCGGCTTTGAAGGAACTACCTTGTTCTGCACTAGCT
CCATCCCTAGAACCCTGCTTCTCCAGGCCCGAGAGACCAGCAAACCGTCGCCCTCCGTCC
CGTTGGGCCCCACATTCCCCCACTGCCTCACCAGTTCCGTCACCCGGGGACCCGACCTCC
TTGGAGGAGCTAGGCGATGAGGAGCCACCCGGGGAGAAGCCACACCTGTGATGCAGGTTC
TCATGGATAATCCGGAATAATTCACTGTAATTTGCAACACCATGCCGTCATCAACCGAAC
TCTGCCCCCAAAAGGAGAGATCTGGTTTTCTCAAGGTCAAAGAATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCATTTTTACTCTCCCTGAGCAACATGTAAGTGAGTATTCAAAAGGTGCAGATGTC
CTGTCTTTTGCACTTGAGCCAGCTGAAACATATGTTTGGGGACAACCCTCCCTGGGGACC
TGTCTGAGTAACTGTGTCTCCTCTTCGGCTTTGAAGGAACTACCTTGTTCTGCACTAGCT
CCATCCCTAGAACCCTGCTTCTCCAGGCCCGAGAGACCAGCAAACCGTCGCCCTCCGTCC
CGTTGGGCCCCACATTCCCCCACTGCCTCACCAGTTCCGTCACCCGGGGACCCGACCTCC
TTGGAGGAGCTAGGCGATGAGGAGCCACCCGGGGAGAAGCCACACCTGTGATGCAGGTTC
TCATGGATAATCCGGAATAATTCACTGTAATTTGCAACACCATGCCGTCATCAACCGAAC
TCTGCCCCCAAAAGGAGAGATCTGGTTTTCTCAAGGTCAAAGAATGTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-468, gnl|bosTau2|chr24 (28680198-28680622)
               

               
               53-468, gnl|Hg17|chr18 (8821482-8821917)
               

               
               53-468, gnl|Mm7|chr17 (64562625-64562179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-468, gnl|bosTau2|chr24 (28680198-28680622)
               

               
               53-468, gnl|Hg17|chr18 (8821482-8821917)
               

               
               53-468, gnl|Mm7|chr17 (64562625-64562179)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.253004)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ova (0.129132)

	53-468, gnl\|bosTau2\|chr24 (28680198-28680622)
	53-468, gnl\|Hg17\|chr18 (8821482-8821917)
	53-468, gnl\|Mm7\|chr17 (64562625-64562179)