Non-Coding RNA Search

Ss1.1-rova013_b4.5

Sequence:


               
               GAACATGGGAAATAGTCTGATTTTACTGAAATCGAAGGTGTGTGTCATCGGTTGGCTACA
TTTTGGGTATATGCTAAACTGTGAAAATCAGATGAATTGATGCAGCGTTCCCTGCAAGCA
GTTGAAGTGTTCTGTACGTCTGTTTTGTGTCTGGTGCAGAATATGACAATCTACCAACTG
TCCCTTTATTTGAAGTTGGTTCCGCTTTGGAAAGTTCCTGTAAATGCCTTCCTTATATTC
TCCGCCCGAGTCACCTGACTTTGGAATTTGCACCATAATGTTTAAGTGAAGATGCTGTAA
ATAGGTTCAGATTTTACTGTATATGGATTTGGGGTGTTACAGTAGCCTTATTCACCTTTT
TAATAAAAATACACATGAAAACAAGACAGAAATGGCTTTTCTTACCCAGATTGTGTACAT
AGAGCAATGTTGGTTTTTTATAAAGTCTAAGCAAGATGTTTTGTATAAAATCTGAATTTT
GCAATGTATTTAGCTACAGCTTGTTAAACGGCAGTGTCATTCCCCTTTGCACTGTAATGA
GGAAAAAAATGGTATAAAAGGTTGCCAAATTGCTGCATATTTGTGCCGTAATTATGTACC
ATGAATATTTATTTAAAATTTCGTTGTCCAATTTGTAAGTAACGCAGTATTATGCTTGAG
TTATAAATATTTTTTCTTTTCTTTGTTTTATTTTTAATAGCCCGTCCTAGGTTTTTGATC
TGCTTTAGTTTCACATCGCAGTTAGCCCCCAGAAAATGAAATCCGTGAAGTCACATTCCA
AATCTTGTTTCGAACTGAATTTGTTCTTAAAAAAATAAAATATTTTTTTCCTATGGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACATGGGAAATAGTCTGATTTTACTGAAATCGAAGGTGTGTGTCATCGGTTGGCTACA
TTTTGGGTATATGCTAAACTGTGAAAATCAGATGAATTGATGCAGCGTTCCCTGCAAGCA
GTTGAAGTGTTCTGTACGTCTGTTTTGTGTCTGGTGCAGAATATGACAATCTACCAACTG
TCCCTTTATTTGAAGTTGGTTCCGCTTTGGAAAGTTCCTGTAAATGCCTTCCTTATATTC
TCCGCCCGAGTCACCTGACTTTGGAATTTGCACCATAATGTTTAAGTGAAGATGCTGTAA
ATAGGTTCAGATTTTACTGTATATGGATTTGGGGTGTTACAGTAGCCTTATTCACCTTTT
TAATAAAAATACACATGAAAACAAGACAGAAATGGCTTTTCTTACCCAGATTGTGTACAT
AGAGCAATGTTGGTTTTTTATAAAGTCTAAGCAAGATGTTTTGTATAAAATCTGAATTTT
GCAATGTATTTAGCTACAGCTTGTTAAACGGCAGTGTCATTCCCCTTTGCACTGTAATGA
GGAAAAAAATGGTATAAAAGGTTGCCAAATTGCTGCATATTTGTGCCGTAATTATGTACC
ATGAATATTTATTTAAAATTTCGTTGTCCAATTTGTAAGTAACGCAGTATTATGCTTGAG
TTATAAATATTTTTTCTTTTCTTTGTTTTATTTTTAATAGCCCGTCCTAGGTTTTTGATC
TGCTTTAGTTTCACATCGCAGTTAGCCCCCAGAAAATGAAATCCGTGAAGTCACATTCCA
AATCTTGTTTCGAACTGAATTTGTTCTTAAAAAAATAAAATATTTTTTTCCTATGGAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-626, + strand, RNAz p=0.660931

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-626, + strand, RNAz p=0.660931

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004093, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004093, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-841, gnl|bosTau2|chr12 (45198242-45197405)
               

               
               2-841, gnl|Hg17|chr13 (105940933-105940094)
               

               
               2-841, gnl|Mm7|chr8 (8588163-8587319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-841, gnl|bosTau2|chr12 (45198242-45197405)
               

               
               2-841, gnl|Hg17|chr13 (105940933-105940094)
               

               
               2-841, gnl|Mm7|chr8 (8588163-8587319)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               aor (0.390549)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	2-841, gnl\|bosTau2\|chr12 (45198242-45197405)
	2-841, gnl\|Hg17\|chr13 (105940933-105940094)
	2-841, gnl\|Mm7\|chr8 (8588163-8587319)

	aor (0.390549)
	gul (0.355177)
	rec (0.346141)
	vin (0.332557)
	kid (0.259471)
	mgp (0.230681)
	sag (0.182715)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)