Non-Coding RNA Search

Ss1.1-rova013_k10.5

Sequence:


               
               TCTCTTCGCCCCCCACCCGGGAGCTGTCGACGTGGGGCTGCGGCCGCAGGCTGTCAGGGG
TCTGGGTGTGCCTGCCGAGCGGGAGGAGGGGATGGGGGGGCTGCGGCTGCTGGCGGTGGC
TCTCACCTGCTGCTGGTGGCCGCAGGGCAGCCAGGGTAAGACCCTGCGGGGCAGCTTCAG
CAGCGCCGCGGCCCGAGACGCTCAGGGCCAGAGCATCGGCCACTTCGAGTTCCACGGTGA
CCATGCTCTTCTGTGTGTCAGAATCAACAACATAGCGGTAGCTGTCGGAAAGGAAGCTAA
ACTCTACCTGTTCCAAGCCCGGGAATTGCTGAAGCTGCGGGAAGGCAGTAATGGTTATAG
TTGTAGTGAAAAACTATCCAAAGCTCAGTTGACAATGACCATGAATCAGACTGAACATAA
TCTGACAGTGTCCCAGATTCCACATCCACAAACGTGGCACGTGTTTTATGCAGACAAGTA
TACGTGCAAAGAGGACGATGAGAATTCTCAGGGAGAAGATATCCCGTTTGACATGATGTT
ACTAAACCCAGATGCTGAAGGGAATCCCTTCGATCATTTCAGTGCTGGGGAATCTGGGTT
ACATGAGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTTCGCCCCCCACCCGGGAGCTGTCGACGTGGGGCTGCGGCCGCAGGCTGTCAGGGG
TCTGGGTGTGCCTGCCGAGCGGGAGGAGGGGATGGGGGGGCTGCGGCTGCTGGCGGTGGC
TCTCACCTGCTGCTGGTGGCCGCAGGGCAGCCAGGGTAAGACCCTGCGGGGCAGCTTCAG
CAGCGCCGCGGCCCGAGACGCTCAGGGCCAGAGCATCGGCCACTTCGAGTTCCACGGTGA
CCATGCTCTTCTGTGTGTCAGAATCAACAACATAGCGGTAGCTGTCGGAAAGGAAGCTAA
ACTCTACCTGTTCCAAGCCCGGGAATTGCTGAAGCTGCGGGAAGGCAGTAATGGTTATAG
TTGTAGTGAAAAACTATCCAAAGCTCAGTTGACAATGACCATGAATCAGACTGAACATAA
TCTGACAGTGTCCCAGATTCCACATCCACAAACGTGGCACGTGTTTTATGCAGACAAGTA
TACGTGCAAAGAGGACGATGAGAATTCTCAGGGAGAAGATATCCCGTTTGACATGATGTT
ACTAAACCCAGATGCTGAAGGGAATCCCTTCGATCATTTCAGTGCTGGGGAATCTGGGTT
ACATGAGTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45708599|gb|AAH33906.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45708599|gb|AAH33906.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-203, + strand, RNAz p=0.934576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-203, + strand, RNAz p=0.934576

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               9-238, gnl|bosTau2|chr12 (33832747-33832975)
               

               
               9-238, gnl|Hg17|chr13 (94052107-94052329)
               

               
               9-238, gnl|Mm7|chr14 (112539881-112540102)
               


               
               389-597, gnl|bosTau2|chr12 (33841799-33842006)
               

               
               389-597, gnl|canFam2|chr22 (48361754-48362000)
               

               
               389-597, gnl|danRer3|chrNA (52488853-52489101)
               

               
               389-597, gnl|echTel1|scaffold_239009 (883-612)
               

               
               389-597, gnl|galGal2|chr1 (139069402-139069160)
               

               
               389-597, gnl|hg17|chr13 (94062386-94062657)
               

               
               389-597, gnl|Hg17|chr13 (94062439-94062646)
               

               
               389-597, gnl|loxAfr1|scaffold_13259 (27416-27144)
               

               
               389-597, gnl|mm7|chr14 (112550673-112550938)
               

               
               389-597, gnl|Mm7|chr14 (112550722-112550928)
               

               
               389-597, gnl|monDom2|scaffold_11 (58813485-58813206)
               

               
               389-597, gnl|oryCun1|scaffold_117847 (974-702)
               

               
               389-597, gnl|panTro1|chr14 (77091277-77091548)
               

               
               389-597, gnl|rheMac2|chr17 (75017967-75018241)
               

               
               389-597, gnl|rn3|chr15 (102954782-102955024)
               

               
               389-597, gnl|xenTro1|scaffold_486 (677967-678254)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-238, gnl|bosTau2|chr12 (33832747-33832975)
               

               
               9-238, gnl|Hg17|chr13 (94052107-94052329)
               

               
               9-238, gnl|Mm7|chr14 (112539881-112540102)
               


               
               389-597, gnl|bosTau2|chr12 (33841799-33842006)
               

               
               389-597, gnl|canFam2|chr22 (48361754-48362000)
               

               
               389-597, gnl|danRer3|chrNA (52488853-52489101)
               

               
               389-597, gnl|echTel1|scaffold_239009 (883-612)
               

               
               389-597, gnl|galGal2|chr1 (139069402-139069160)
               

               
               389-597, gnl|hg17|chr13 (94062386-94062657)
               

               
               389-597, gnl|Hg17|chr13 (94062439-94062646)
               

               
               389-597, gnl|loxAfr1|scaffold_13259 (27416-27144)
               

               
               389-597, gnl|mm7|chr14 (112550673-112550938)
               

               
               389-597, gnl|Mm7|chr14 (112550722-112550928)
               

               
               389-597, gnl|monDom2|scaffold_11 (58813485-58813206)
               

               
               389-597, gnl|oryCun1|scaffold_117847 (974-702)
               

               
               389-597, gnl|panTro1|chr14 (77091277-77091548)
               

               
               389-597, gnl|rheMac2|chr17 (75017967-75018241)
               

               
               389-597, gnl|rn3|chr15 (102954782-102955024)
               

               
               389-597, gnl|xenTro1|scaffold_486 (677967-678254)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	9-238, gnl\|bosTau2\|chr12 (33832747-33832975)
	9-238, gnl\|Hg17\|chr13 (94052107-94052329)
	9-238, gnl\|Mm7\|chr14 (112539881-112540102)

	389-597, gnl\|bosTau2\|chr12 (33841799-33842006)
	389-597, gnl\|canFam2\|chr22 (48361754-48362000)
	389-597, gnl\|danRer3\|chrNA (52488853-52489101)
	389-597, gnl\|echTel1\|scaffold_239009 (883-612)
	389-597, gnl\|galGal2\|chr1 (139069402-139069160)
	389-597, gnl\|hg17\|chr13 (94062386-94062657)
	389-597, gnl\|Hg17\|chr13 (94062439-94062646)
	389-597, gnl\|loxAfr1\|scaffold_13259 (27416-27144)
	389-597, gnl\|mm7\|chr14 (112550673-112550938)
	389-597, gnl\|Mm7\|chr14 (112550722-112550928)
	389-597, gnl\|monDom2\|scaffold_11 (58813485-58813206)
	389-597, gnl\|oryCun1\|scaffold_117847 (974-702)
	389-597, gnl\|panTro1\|chr14 (77091277-77091548)
	389-597, gnl\|rheMac2\|chr17 (75017967-75018241)
	389-597, gnl\|rn3\|chr15 (102954782-102955024)
	389-597, gnl\|xenTro1\|scaffold_486 (677967-678254)