Non-Coding RNA Search

Ss1.1-rova013_l20.5

Sequence:


               
               TTGAACACTTAAAAGGAGATTTTGGTGAAAAATCCCAGTTTTCCATTCGTCTGAAAACAC
GTTCCTCCCATGGGATGATCTTCTATGTCTCAGATCCAGAAGAGAATGACTTCATGACTC
TGTTCTTAGCCCATGGCCGCTTGGTGTTCATGTTTAATGTTGGCCACAAGAAACTGAAGA
TTAGAAGCCAGGAGAAATACAATGATGGATTGTGGCACGATGTGATATTTATTCGGGAAA
AGAGCAGTGGCCGACTGATAATTGATGGTCTTCGAGTCCTAGAAGAAAGTCTTCCTCCTA
CCGGAGCTACGTGGAAAATCAAGGGTCCTATTTATTTGGGAGGTGTGGCTCCTGGAAGGG
CTGTGAAAAATGTCCAGATAAACTCCGTCTACAGTTTCAGTGGCTGCCTCAGCAATCTCC
AGCTCAACGGAGCCTCCATCTCCTCTGCTTCTCAGACATTTAGCGTGACTCCTTGTTTTG
AAGGTCCAATGGAAACAGGAACATATTTTTCAACAGAAGGGGGATATGTGGTTCTAGATG
AGTCTTTCAATATTGGATTGAAATTTGAGATTGCATTTGAAGTCCGTCCCAGAAGCAGTT
CTGGAATCTTTGTTCATGGCCACAGTGTCAACGGGGAGTACCTAAATGTTCACATGAAAA
ATGGGCAGGTCATAGTGAAAGTCAACAATGGCATCAGAGACTTTTCCACTTCAGTGGCAC
CCAAGCAAAGTCTCTGTGATGGCCGTTGGCACAGAATTACAGTTATTAGAGATTCAAATG
TGGTTCAGTTGGATGTAGACTCTGAAGTGAACCACGTGGTTGGACCTCTGAATCCAAAAC
CAGTTGATCACAGGGAGCCTGTGTTTGTTGGAGGTGTTCCAGAGTCTCTGTTGACACCAC
GCTTGGCCCCTGGCAGACCCTTCACAGGCTGCATCCGTCACTTTGTGATTGATGGGCGCC
CAGTGAGCTTCAGTAAAGCAGCCCTCGTCAGTGGTGCCGTGAGCATCAACTCCTGTCCGG
CAGCCTGACACAGCAGAGCTCCCCAAGTACAAAGTTCTTCAGAGCACTGAAAGAAACAAA
GCCAGCCAGGAGAGGGGACTCTTCCTCTCAGTGGAAGCTTTCATCTAGTTGAGCAGGACT
TAAATGAATCATCAGGGACTGGATGTTTATAATTTCTTATTCGGATTCTTACTTTGGATC
CAAAATGTCTGCCATGGACAACAATCAAAGGAGTGTTAAACTTTCCTGCCTTGTATTATT
TCTTGCTGGTGAAATTACTGTTCCTGTTTCTAATAAAATAGAAAGGATTCTAAATAAACA
CTGGTACACATTTTTAAAGTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAACACTTAAAAGGAGATTTTGGTGAAAAATCCCAGTTTTCCATTCGTCTGAAAACAC
GTTCCTCCCATGGGATGATCTTCTATGTCTCAGATCCAGAAGAGAATGACTTCATGACTC
TGTTCTTAGCCCATGGCCGCTTGGTGTTCATGTTTAATGTTGGCCACAAGAAACTGAAGA
TTAGAAGCCAGGAGAAATACAATGATGGATTGTGGCACGATGTGATATTTATTCGGGAAA
AGAGCAGTGGCCGACTGATAATTGATGGTCTTCGAGTCCTAGAAGAAAGTCTTCCTCCTA
CCGGAGCTACGTGGAAAATCAAGGGTCCTATTTATTTGGGAGGTGTGGCTCCTGGAAGGG
CTGTGAAAAATGTCCAGATAAACTCCGTCTACAGTTTCAGTGGCTGCCTCAGCAATCTCC
AGCTCAACGGAGCCTCCATCTCCTCTGCTTCTCAGACATTTAGCGTGACTCCTTGTTTTG
AAGGTCCAATGGAAACAGGAACATATTTTTCAACAGAAGGGGGATATGTGGTTCTAGATG
AGTCTTTCAATATTGGATTGAAATTTGAGATTGCATTTGAAGTCCGTCCCAGAAGCAGTT
CTGGAATCTTTGTTCATGGCCACAGTGTCAACGGGGAGTACCTAAATGTTCACATGAAAA
ATGGGCAGGTCATAGTGAAAGTCAACAATGGCATCAGAGACTTTTCCACTTCAGTGGCAC
CCAAGCAAAGTCTCTGTGATGGCCGTTGGCACAGAATTACAGTTATTAGAGATTCAAATG
TGGTTCAGTTGGATGTAGACTCTGAAGTGAACCACGTGGTTGGACCTCTGAATCCAAAAC
CAGTTGATCACAGGGAGCCTGTGTTTGTTGGAGGTGTTCCAGAGTCTCTGTTGACACCAC
GCTTGGCCCCTGGCAGACCCTTCACAGGCTGCATCCGTCACTTTGTGATTGATGGGCGCC
CAGTGAGCTTCAGTAAAGCAGCCCTCGTCAGTGGTGCCGTGAGCATCAACTCCTGTCCGG
CAGCCTGACACAGCAGAGCTCCCCAAGTACAAAGTTCTTCAGAGCACTGAAAGAAACAAA
GCCAGCCAGGAGAGGGGACTCTTCCTCTCAGTGGAAGCTTTCATCTAGTTGAGCAGGACT
TAAATGAATCATCAGGGACTGGATGTTTATAATTTCTTATTCGGATTCTTACTTTGGATC
CAAAATGTCTGCCATGGACAACAATCAAAGGAGTGTTAAACTTTCCTGCCTTGTATTATT
TCTTGCTGGTGAAATTACTGTTCCTGTTTCTAATAAAATAGAAAGGATTCTAAATAAACA
CTGGTACACATTTTTAAAGTGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1814230|gb|AAB41840.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1814230|gb|AAB41840.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               32-223, gnl|bosTau2|chr9 (19387191-19387382)
               

               
               32-223, gnl|Hg17|chr6 (112548368-112548177)
               

               
               32-223, gnl|Mm7|chr10 (38874694-38874885)
               


               
               375-537, gnl|bosTau2|chr9 (19389978-19390140)
               

               
               375-537, gnl|Hg17|chr6 (112545797-112545635)
               

               
               375-537, gnl|Mm7|chr10 (38878123-38878285)
               


               
               877-1341, gnl|bosTau2|chr9 (19397860-19398326)
               

               
               877-1341, gnl|Hg17|chr6 (112537484-112537002)
               

               
               877-1341, gnl|Mm7|chr10 (38889681-38890155)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-223, gnl|bosTau2|chr9 (19387191-19387382)
               

               
               32-223, gnl|Hg17|chr6 (112548368-112548177)
               

               
               32-223, gnl|Mm7|chr10 (38874694-38874885)
               


               
               375-537, gnl|bosTau2|chr9 (19389978-19390140)
               

               
               375-537, gnl|Hg17|chr6 (112545797-112545635)
               

               
               375-537, gnl|Mm7|chr10 (38878123-38878285)
               


               
               877-1341, gnl|bosTau2|chr9 (19397860-19398326)
               

               
               877-1341, gnl|Hg17|chr6 (112537484-112537002)
               

               
               877-1341, gnl|Mm7|chr10 (38889681-38890155)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               gul (0.710353)
               

               
               hea (0.613497)
               

               
               fat (0.58971)
               

               
               eru (0.480192)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.710353)
               

               
               hea (0.613497)
               

               
               fat (0.58971)
               

               
               eru (0.480192)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               jej (0.0989218)

	32-223, gnl\|bosTau2\|chr9 (19387191-19387382)
	32-223, gnl\|Hg17\|chr6 (112548368-112548177)
	32-223, gnl\|Mm7\|chr10 (38874694-38874885)

	375-537, gnl\|bosTau2\|chr9 (19389978-19390140)
	375-537, gnl\|Hg17\|chr6 (112545797-112545635)
	375-537, gnl\|Mm7\|chr10 (38878123-38878285)

	877-1341, gnl\|bosTau2\|chr9 (19397860-19398326)
	877-1341, gnl\|Hg17\|chr6 (112537484-112537002)
	877-1341, gnl\|Mm7\|chr10 (38889681-38890155)

	gul (0.710353)
	hea (0.613497)
	fat (0.58971)
	eru (0.480192)
	csk (0.422238)
	hlv (0.417769)
	ste (0.405625)
	aor (0.390549)
	elu (0.385356)
	bla (0.373042)
	tbr (0.308356)
	cte (0.29274)
	che (0.272628)
	pla (0.267344)
	ova (0.258264)
	thg (0.253582)
	nlu (0.191681)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	nca (0.136874)
	ssp (0.13552)
	jej (0.0989218)