Non-Coding RNA Search

Ss1.1-rova014_m7.5

Sequence:


               
               TATCAAAATAGGTAAATGTTTATAAAATTCAGTTTTTGTAGGATTTGCCAAGGAAAAGTC
CCTTGGTTGAATTGTTTCTCACGCATTAAACTTCACAGAAGTGATCCATATTCAGTACTG
GTTTTAATCACTTTTTAAATAACAAGGATAGGATGTTTGAAAGGAAGCCACAGTTTGTTC
ATTTTTATATGACTAAGATAAATTCGGAGGGATCTGTGATCATATTCAGTTAAGGGAGGA
AAAAAAAATCACTGAAAGGATTTTAGCAATACAGTCATCCCTCGGTCTCCACAGGGGACT
GGTTCCAGGACCCCCGAGGACACCAAAATCCATGGATGCTCACGTCCCTTATATGAAGTC
ACCTTCTGTATCACAGGTTCTGCATCCATGGATGGGAAGGGCTGCCTATATACTGATCTA
AAAAAGATGTTTTATAAATGATCTGTTGCAGTTTCTACAGGTCTCTGTATCTTTCAACAC
TGATAACTTTACCATTTACAGAGAGTAAGAGCATCATACTTGCTGACTTAGCTATTTACA
TTTGATTGAGGATAAAATGTATTCTGATGAGTGTCTGCTGTCTGTGAACTTAACCACTGC
TTTCTTTAGTTCTAGTTAGTAGGGGTCTAGCCACTGTTTCTGTTGTTTCCTTTTAAAAGC
GGTTAAAGCCAATCATTTCATGTTTGTATTTCCGTTCCTCTTTATTTCTGCTTTTGTGGA
AGCTGTTGATCGAATAGTCAAAACTAATTCTATGTGCAAAGAGCCCCAAGGGCTGAATGA
CTCCCTTTGTACCTGAGAAATGATTCTTGTTATATTGCATTCTACAAATGATATGCTGGA
TTAATTGCCTTGAGTTGATGATGGAGAAACTGCTTTGGACAACACTAAAGGTGTGATTTT
ATGTCTTAGTTTTATTTTCAGTCTTGCTAAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCAAAATAGGTAAATGTTTATAAAATTCAGTTTTTGTAGGATTTGCCAAGGAAAAGTC
CCTTGGTTGAATTGTTTCTCACGCATTAAACTTCACAGAAGTGATCCATATTCAGTACTG
GTTTTAATCACTTTTTAAATAACAAGGATAGGATGTTTGAAAGGAAGCCACAGTTTGTTC
ATTTTTATATGACTAAGATAAATTCGGAGGGATCTGTGATCATATTCAGTTAAGGGAGGA
AAAAAAAATCACTGAAAGGATTTTAGCAATACAGTCATCCCTCGGTCTCCACAGGGGACT
GGTTCCAGGACCCCCGAGGACACCAAAATCCATGGATGCTCACGTCCCTTATATGAAGTC
ACCTTCTGTATCACAGGTTCTGCATCCATGGATGGGAAGGGCTGCCTATATACTGATCTA
AAAAAGATGTTTTATAAATGATCTGTTGCAGTTTCTACAGGTCTCTGTATCTTTCAACAC
TGATAACTTTACCATTTACAGAGAGTAAGAGCATCATACTTGCTGACTTAGCTATTTACA
TTTGATTGAGGATAAAATGTATTCTGATGAGTGTCTGCTGTCTGTGAACTTAACCACTGC
TTTCTTTAGTTCTAGTTAGTAGGGGTCTAGCCACTGTTTCTGTTGTTTCCTTTTAAAAGC
GGTTAAAGCCAATCATTTCATGTTTGTATTTCCGTTCCTCTTTATTTCTGCTTTTGTGGA
AGCTGTTGATCGAATAGTCAAAACTAATTCTATGTGCAAAGAGCCCCAAGGGCTGAATGA
CTCCCTTTGTACCTGAGAAATGATTCTTGTTATATTGCATTCTACAAATGATATGCTGGA
TTAATTGCCTTGAGTTGATGATGGAGAAACTGCTTTGGACAACACTAAAGGTGTGATTTT
ATGTCTTAGTTTTATTTTCAGTCTTGCTAAATAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               230-421, - strand, RNAz p=0.999663
               

               
               689-808, - strand, RNAz p=0.548091

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-421, - strand, RNAz p=0.999663
               

               
               689-808, - strand, RNAz p=0.548091

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-936, gnl|bosTau2|chr27 (21533749-21532828)
               

               
               1-936, gnl|Hg17|chr8 (37733494-37734332)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr27 (21533749-21532828)
               

               
               1-936, gnl|Hg17|chr8 (37733494-37734332)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               ova (0.645661)
               

               
               sug (0.509165)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.645661)
               

               
               sug (0.509165)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	230-421, - strand, RNAz p=0.999663
	689-808, - strand, RNAz p=0.548091

	1-936, gnl\|bosTau2\|chr27 (21533749-21532828)
	1-936, gnl\|Hg17\|chr8 (37733494-37734332)

	ova (0.645661)
	sug (0.509165)
	rec (0.346141)
	lyg (0.266205)
	bla (0.248694)
	cbl (0.229595)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	liv (0.146284)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)