Ss1.1-rova015_b10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGATGGTCTCCAACATGAAGCTTGCTCATGTTATTCTGTTACTTTTGTGCTTCTACT TAAGTTTTTGCAAGGTTAATTGTGCAAGAAAAAGAAAGAAGGTGGTAACGAAACTAGAGC CCACCTCAGGCTCAGACACATCTCAAGAGGATCTTGTGGAGAAAAAGTGCTTAACTGAAA AATACACACATCTCTCCTGCGATAAAGTCTTCTGCCAGCCATGGCAGAAATGCATCGATG GGACCTGTATCTGTAAACTTCCTTATCAATGCCCAAAGAATGGGACCAGCGTGTGTTCAA CTAATGGGAAAAGCTACCCAACTTACTGTCAGCAAAAGAGTTTTGAATGTCTTCGTCCAG AGGCAAAGTTTTTAAAAAGTGGAGCATGCACAGGCGAAGAACAATTTAGTGTGTCCTTGG ATCGTGGCAATGGAGATTCAGAAGGAATCGTTGAAGTAAAACTTGTAGACCAAGATAAGA AAATGTATATATGTGCAAAAAGCTGGAGCCTTACACAGGCCAATGTGGCCTGCCTTGACC TTGGATTTAAACTGGGTGCTCTTTATATTCAAAGAAGAGATCCTCATATAAATTCCCCTG AATGTCTGCATGTGCATTGTCGAGGATCAGAGACCAGTTTGGCGGAATGTACTTTTACTA AGGGAACAACTAGCAGGTCCGAGGGGTTAGCTGGTGTGGTGTGTTACACAGAGAATGCAG TTTCTCCAACAAATGACTACTTTCAGTGTGTGAATGGGAAACACATTTCTCAGAAGAAGA CCTGTGATGGTATCAATGATTGTGGAGACCAGAGTGATGAGCTGTGCTGTAAAGGGTGCC GAGGTGAAAGTTTTTTTTGTAAGTCAGGTGTTTGTATTCCAAGGAAGTATAAGTGCAATG GTGAGGTAGACTGCATTACGGGAGAAGATGAAGTTGGTTGTGAAGGAAGTGAACATCCTG AAATTAAAGAAGAAACAGAAATGTTGACTGCTGACATGAATGCAGAAAGAAAACGGATAA AGTCATTTTTCCCTAAACTATCCTGTGGAGTTAAAAGCAGCACGCACATTCGAAGGAAAC GAGTCGTAGGAGGACAGCCAGCAGAAGTGGGGGACTTCCCATGGCAAGTGGCAATTAAAG AAGGTGAGAAAATCAACTGTGGAGGAATTTATATTGGTGGCTGTTGGATTTTGACTGCTG CACATTGTGTCAGAGCCAGCAAAGCTCCTCGTTACCAAATATGGACCTCGTTTACAGACT GGTTAAATCCTGACCCTCAGATAGTCGTTCAGTTTGTAAAGCAAGTTATTATTCATGAAA AGTACAATGGAACCACCTACCAAAATGACATAGCTTTGATTGAAATGAAAAAGCAGCCAG GCCGAAGCGAATGTGTGTTGCTTAAATCCGTTCCTGCCTGTGTCCCCTGGTCTCCGCATC TGTTTCAACCGAATGATAAATGCATCGTTTCTGGCTGGGGTCGAGAAAAAGATAACAAAA AAGTCTATTCACTCAAGTGGGGTGAAGTTCACCTAATAAGCAACTGTTCTAAGTTTTACC TAAATCGCTTCTTTGAAAAAGAAATGGTGTGTGCAGGTACAGATGACGGTTCTATTGATG CCTGTAAAGGGGATTCTGGAGGCCCCTTAGTCTGTACAGATGCCAACAACATGACTTATG TTTGGGGTGTTGTGAGTTGGGGTGAAAACTGTGGAAAACCAGAGTTCCCAGGTGTTTATA CCAAAGTGGCCAATTATTTTGACTGGATCAGCCTTCATGTAGGAAGGCCCCTTATTTCTC AGCACAACGTGTAACACGGTGATCTCACTCTTCTTTCTACTCTTTCTCTCTCGGGAGTTT CATGTTAATTGCTATCATCCTGTGTAATTAGTACTTCTTCAGGAAAAAAATATAAAGGCA GTAGTATTGAATATTTTGTAAAGGTCTCTACAAAGTTTATGCCATGTTGGAATTTTGCTA TATAATTCTCAAATAAATATGTTAGCATACATAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGATGGTCTCCAACATGAAGCTTGCTCATGTTATTCTGTTACTTTTGTGCTTCTACT TAAGTTTTTGCAAGGTTAATTGTGCAAGAAAAAGAAAGAAGGTGGTAACGAAACTAGAGC CCACCTCAGGCTCAGACACATCTCAAGAGGATCTTGTGGAGAAAAAGTGCTTAACTGAAA AATACACACATCTCTCCTGCGATAAAGTCTTCTGCCAGCCATGGCAGAAATGCATCGATG GGACCTGTATCTGTAAACTTCCTTATCAATGCCCAAAGAATGGGACCAGCGTGTGTTCAA CTAATGGGAAAAGCTACCCAACTTACTGTCAGCAAAAGAGTTTTGAATGTCTTCGTCCAG AGGCAAAGTTTTTAAAAAGTGGAGCATGCACAGGCGAAGAACAATTTAGTGTGTCCTTGG ATCGTGGCAATGGAGATTCAGAAGGAATCGTTGAAGTAAAACTTGTAGACCAAGATAAGA AAATGTATATATGTGCAAAAAGCTGGAGCCTTACACAGGCCAATGTGGCCTGCCTTGACC TTGGATTTAAACTGGGTGCTCTTTATATTCAAAGAAGAGATCCTCATATAAATTCCCCTG AATGTCTGCATGTGCATTGTCGAGGATCAGAGACCAGTTTGGCGGAATGTACTTTTACTA AGGGAACAACTAGCAGGTCCGAGGGGTTAGCTGGTGTGGTGTGTTACACAGAGAATGCAG TTTCTCCAACAAATGACTACTTTCAGTGTGTGAATGGGAAACACATTTCTCAGAAGAAGA CCTGTGATGGTATCAATGATTGTGGAGACCAGAGTGATGAGCTGTGCTGTAAAGGGTGCC GAGGTGAAAGTTTTTTTTGTAAGTCAGGTGTTTGTATTCCAAGGAAGTATAAGTGCAATG GTGAGGTAGACTGCATTACGGGAGAAGATGAAGTTGGTTGTGAAGGAAGTGAACATCCTG AAATTAAAGAAGAAACAGAAATGTTGACTGCTGACATGAATGCAGAAAGAAAACGGATAA AGTCATTTTTCCCTAAACTATCCTGTGGAGTTAAAAGCAGCACGCACATTCGAAGGAAAC GAGTCGTAGGAGGACAGCCAGCAGAAGTGGGGGACTTCCCATGGCAAGTGGCAATTAAAG AAGGTGAGAAAATCAACTGTGGAGGAATTTATATTGGTGGCTGTTGGATTTTGACTGCTG CACATTGTGTCAGAGCCAGCAAAGCTCCTCGTTACCAAATATGGACCTCGTTTACAGACT GGTTAAATCCTGACCCTCAGATAGTCGTTCAGTTTGTAAAGCAAGTTATTATTCATGAAA AGTACAATGGAACCACCTACCAAAATGACATAGCTTTGATTGAAATGAAAAAGCAGCCAG GCCGAAGCGAATGTGTGTTGCTTAAATCCGTTCCTGCCTGTGTCCCCTGGTCTCCGCATC TGTTTCAACCGAATGATAAATGCATCGTTTCTGGCTGGGGTCGAGAAAAAGATAACAAAA AAGTCTATTCACTCAAGTGGGGTGAAGTTCACCTAATAAGCAACTGTTCTAAGTTTTACC TAAATCGCTTCTTTGAAAAAGAAATGGTGTGTGCAGGTACAGATGACGGTTCTATTGATG CCTGTAAAGGGGATTCTGGAGGCCCCTTAGTCTGTACAGATGCCAACAACATGACTTATG TTTGGGGTGTTGTGAGTTGGGGTGAAAACTGTGGAAAACCAGAGTTCCCAGGTGTTTATA CCAAAGTGGCCAATTATTTTGACTGGATCAGCCTTCATGTAGGAAGGCCCCTTATTTCTC AGCACAACGTGTAACACGGTGATCTCACTCTTCTTTCTACTCTTTCTCTCTCGGGAGTTT CATGTTAATTGCTATCATCCTGTGTAATTAGTACTTCTTCAGGAAAAAAATATAAAGGCA GTAGTATTGAATATTTTGTAAAGGTCTCTACAAAGTTTATGCCATGTTGGAATTTTGCTA TATAATTCTCAAATAAATATGTTAGCATACATAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1633-1752, + strand, RNAz p=0.566252 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1633-1752, + strand, RNAz p=0.566252 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000204, + |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 541-723, gnl|bosTau2|chr6 (3636336-3636158) | |
| 541-723, gnl|canFam2|chr32 (32883414-32883717) | |
| 541-723, gnl|dasNov1|scaffold_58551 (4029-4349) | |
| 541-723, gnl|echTel1|scaffold_315942 (54145-54454) | |
| 541-723, gnl|galGal2|chr4 (58640144-58639833) | |
| 541-723, gnl|hg17|chr4 (111040162-111040476) | |
| 541-723, gnl|Hg17|chr4 (111040464-111040274) | |
| 541-723, gnl|loxAfr1|scaffold_24638 (39864-40191) | |
| 541-723, gnl|mm7|chr3 (129694591-129694292) | |
| 541-723, gnl|Mm7|chr3 (129694302-129694498) | |
| 541-723, gnl|oryCun1|scaffold_193405 (35878-36218) | |
| 541-723, gnl|panTro1|chr3 (127537849-127538163) | |
| 541-723, gnl|rheMac2|chr5 (102660366-102660677) | |
| 541-723, gnl|rn3|chr2 (227295597-227295298) | |
| 828-946, gnl|bosTau2|chr6 (3635082-3634964) | |
| 828-946, gnl|canFam2|chr32 (32881920-32882055) | |
| 828-946, gnl|dasNov1|scaffold_58551 (2599-2734) | |
| 828-946, gnl|echTel1|scaffold_237792 (7743-7878) | |
| 828-946, gnl|galGal2|chr4 (58641639-58641496) | |
| 828-946, gnl|hg17|chr4 (111039007-111039142) | |
| 828-946, gnl|Hg17|chr4 (111039147-111039029) | |
| 828-946, gnl|loxAfr1|scaffold_24638 (37155-37285) | |
| 828-946, gnl|mm7|chr3 (129698202-129698067) | |
| 828-946, gnl|Mm7|chr3 (129698060-129698178) | |
| 828-946, gnl|oryCun1|scaffold_193405 (34017-34151) | |
| 828-946, gnl|panTro1|chr3 (127536694-127536829) | |
| 828-946, gnl|rheMac2|chr5 (102659214-102659349) | |
| 828-946, gnl|rn3|chr2 (227298268-227298133) | |
| 828-946, gnl|xenTro1|scaffold_445 (947658-947776) | |
| 1004-1110, gnl|bosTau2|chr6 (3624232-3624126) | |
| 1004-1110, gnl|canFam2|chr32 (32871163-32871345) | |
| 1004-1110, gnl|dasNov1|scaffold_8432 (49088-48873) | |
| 1004-1110, gnl|echTel1|scaffold_94692 (4298-4083) | |
| 1004-1110, gnl|galGal2|chr4 (58643466-58643256) | |
| 1004-1110, gnl|hg17|chr4 (111028232-111028445) | |
| 1004-1110, gnl|Hg17|chr4 (111028364-111028258) | |
| 1004-1110, gnl|loxAfr1|scaffold_28493 (37923-38138) | |
| 1004-1110, gnl|mm7|chr3 (129707689-129707481) | |
| 1004-1110, gnl|Mm7|chr3 (129707559-129707665) | |
| 1004-1110, gnl|monDom2|scaffold_9 (84955192-84955010) | |
| 1004-1110, gnl|panTro1|chr3 (127526347-127526560) | |
| 1004-1110, gnl|rn3|chr2 (227305511-227305299) | |
| 1206-1494, gnl|bosTau2|chr6 (3620535-3620247) | |
| 1206-1494, gnl|Hg17|chr4 (111025270-111024977) | |
| 1206-1494, gnl|Mm7|chr3 (129712187-129712475) | |
| 1594-2013, gnl|bosTau2|chr6 (3611695-3611278) | |
| 1594-2013, gnl|Hg17|chr4 (111019873-111019455) | |
| 1594-2013, gnl|Mm7|chr3 (129714272-129714683) | |
| 1691-1990, gnl|bosTau2|chr11 (50247955-50247665) | |
| 1691-1990, gnl|Hg17|chr2 (30729079-30729386) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 541-723, gnl|bosTau2|chr6 (3636336-3636158) | |
| 541-723, gnl|canFam2|chr32 (32883414-32883717) | |
| 541-723, gnl|dasNov1|scaffold_58551 (4029-4349) | |
| 541-723, gnl|echTel1|scaffold_315942 (54145-54454) | |
| 541-723, gnl|galGal2|chr4 (58640144-58639833) | |
| 541-723, gnl|hg17|chr4 (111040162-111040476) | |
| 541-723, gnl|Hg17|chr4 (111040464-111040274) | |
| 541-723, gnl|loxAfr1|scaffold_24638 (39864-40191) | |
| 541-723, gnl|mm7|chr3 (129694591-129694292) | |
| 541-723, gnl|Mm7|chr3 (129694302-129694498) | |
| 541-723, gnl|oryCun1|scaffold_193405 (35878-36218) | |
| 541-723, gnl|panTro1|chr3 (127537849-127538163) | |
| 541-723, gnl|rheMac2|chr5 (102660366-102660677) | |
| 541-723, gnl|rn3|chr2 (227295597-227295298) | |
| 828-946, gnl|bosTau2|chr6 (3635082-3634964) | |
| 828-946, gnl|canFam2|chr32 (32881920-32882055) | |
| 828-946, gnl|dasNov1|scaffold_58551 (2599-2734) | |
| 828-946, gnl|echTel1|scaffold_237792 (7743-7878) | |
| 828-946, gnl|galGal2|chr4 (58641639-58641496) | |
| 828-946, gnl|hg17|chr4 (111039007-111039142) | |
| 828-946, gnl|Hg17|chr4 (111039147-111039029) | |
| 828-946, gnl|loxAfr1|scaffold_24638 (37155-37285) | |
| 828-946, gnl|mm7|chr3 (129698202-129698067) | |
| 828-946, gnl|Mm7|chr3 (129698060-129698178) | |
| 828-946, gnl|oryCun1|scaffold_193405 (34017-34151) | |
| 828-946, gnl|panTro1|chr3 (127536694-127536829) | |
| 828-946, gnl|rheMac2|chr5 (102659214-102659349) | |
| 828-946, gnl|rn3|chr2 (227298268-227298133) | |
| 828-946, gnl|xenTro1|scaffold_445 (947658-947776) | |
| 1004-1110, gnl|bosTau2|chr6 (3624232-3624126) | |
| 1004-1110, gnl|canFam2|chr32 (32871163-32871345) | |
| 1004-1110, gnl|dasNov1|scaffold_8432 (49088-48873) | |
| 1004-1110, gnl|echTel1|scaffold_94692 (4298-4083) | |
| 1004-1110, gnl|galGal2|chr4 (58643466-58643256) | |
| 1004-1110, gnl|hg17|chr4 (111028232-111028445) | |
| 1004-1110, gnl|Hg17|chr4 (111028364-111028258) | |
| 1004-1110, gnl|loxAfr1|scaffold_28493 (37923-38138) | |
| 1004-1110, gnl|mm7|chr3 (129707689-129707481) | |
| 1004-1110, gnl|Mm7|chr3 (129707559-129707665) | |
| 1004-1110, gnl|monDom2|scaffold_9 (84955192-84955010) | |
| 1004-1110, gnl|panTro1|chr3 (127526347-127526560) | |
| 1004-1110, gnl|rn3|chr2 (227305511-227305299) | |
| 1206-1494, gnl|bosTau2|chr6 (3620535-3620247) | |
| 1206-1494, gnl|Hg17|chr4 (111025270-111024977) | |
| 1206-1494, gnl|Mm7|chr3 (129712187-129712475) | |
| 1594-2013, gnl|bosTau2|chr6 (3611695-3611278) | |
| 1594-2013, gnl|Hg17|chr4 (111019873-111019455) | |
| 1594-2013, gnl|Mm7|chr3 (129714272-129714683) | |
| 1691-1990, gnl|bosTau2|chr11 (50247955-50247665) | |
| 1691-1990, gnl|Hg17|chr2 (30729079-30729386) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| lun (2.55831) | |
| ova (0.774793) | |
| sin (0.69979) | |
| eli (0.607257) | |
| lin (0.582411) | |
| pro (0.512033) | |
| nje (0.49776) | |
| tra (0.492368) | |
| spc (0.453463) | |
| fli (0.405762) | |
| eje (0.395335) | |
| col (0.390016) | |
| ill (0.351185) | |
| rec (0.346141) | |
| ece (0.229305) | |
| jej (0.197844) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| liv (0.146284) | |
| nca (0.136874) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (2.55831) | |
| ova (0.774793) | |
| sin (0.69979) | |
| eli (0.607257) | |
| lin (0.582411) | |
| pro (0.512033) | |
| nje (0.49776) | |
| tra (0.492368) | |
| spc (0.453463) | |
| fli (0.405762) | |
| eje (0.395335) | |
| col (0.390016) | |
| ill (0.351185) | |
| rec (0.346141) | |
| ece (0.229305) | |
| jej (0.197844) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| liv (0.146284) | |
| nca (0.136874) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |