Ss1.1-rova015_o4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTGCTGAGATCATTTCTGGTGCTGTGGAAGCAGCTGGAAGTTCTAAAGGAGCACTGGG GCCGACTTAAGCTGCAAGGCCAGGACATCAATTCTTTGTCTCTCCACAAGCAGTTCTCAG AGCTGTATGAAACTGACATTCTCTACCCTAGCATGAAAGCTATAGCTAGGCGGATGGGGA ATGAAGATGAATTTGAAGGACTTATAATAAGTTGTCAGTCTATTCTTCCCCCCAGAGGAG CTTCAGAAATTGAAGTAAAAACTCAGCAGCTTCAGAAACTTCTGGAAAATCTTGAAATTC ATATGATCCAGGAGGTAATAAGAAAAGTTGACAGAGATATAACACTGGTTATATCAGAAA AATCCAAGGAGCACCTTACTCTACCTACAGATCTTTGGAAACACCAAGTCATGAAAGAAA ACTTTTCATTTATCAGACCACAAATAGTTGAAAATTTTGTACAGAGATTACTGGAGAATT ACCAGGATGGTGGACTAGAGATCACTTTCAGGAAAGACCACCTTGAGGCCTGCCTCCTTT CCCTGGGTTGCGACGTGATGGCCAGGGAACGCAGCAACTTCGAGAGCTACTCCATGTGTT ACGAGCATGTGTTGGAGCATGCTAGGCAAAAGCTCTGCCAGAAGGAGCAGGAATTAGACA TTATACGAAGAGGTCAGAGTCCACCTGAAGACAATGCTGGTCAGATTGCAGAGCTCAGTC ATAGTATGATCATGGAAATCACTGCCCTGAGAGCCCAACTCACAGATTTGGAGGAGGAGA GCCTGAATCTCAAAACTCAGATTAGAAAAGAAGTCCAAGAAGAATATGAAGCATTAGTCC AAGCTTTGTTTGTGACATGTTTACACATCAAAGAGAAGCTGGAGGAGAATCAACTTAATT TGATCCAGAAAGTATGTGAGCTCGTTGGCGAAGTAAGAACAGAAGGGATTGACAATATGA AGAACCTGAAGAAGAAGTGGGGCTCTGCCAGACCTGATGAAGAAATGCAAGAAAGCCCAG CCAAAGAGCAGCTGCGGGCCTTGGAGCAGGACAACTGTAGCCTGGCTGCCCTGGTGTGCA AAGTGAGGAGCCTGGGCCGCTGGAGGCTGGCAGCACAGCAGGAGCGCTTCCGGGGCCAGC TGAGCAAGGCTGAGAAGGAAGCTATGCAAAGTAAAAAAGAGTGTTTGAACATCAAGCTAA TGGCAGAACAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTGCTGAGATCATTTCTGGTGCTGTGGAAGCAGCTGGAAGTTCTAAAGGAGCACTGGG GCCGACTTAAGCTGCAAGGCCAGGACATCAATTCTTTGTCTCTCCACAAGCAGTTCTCAG AGCTGTATGAAACTGACATTCTCTACCCTAGCATGAAAGCTATAGCTAGGCGGATGGGGA ATGAAGATGAATTTGAAGGACTTATAATAAGTTGTCAGTCTATTCTTCCCCCCAGAGGAG CTTCAGAAATTGAAGTAAAAACTCAGCAGCTTCAGAAACTTCTGGAAAATCTTGAAATTC ATATGATCCAGGAGGTAATAAGAAAAGTTGACAGAGATATAACACTGGTTATATCAGAAA AATCCAAGGAGCACCTTACTCTACCTACAGATCTTTGGAAACACCAAGTCATGAAAGAAA ACTTTTCATTTATCAGACCACAAATAGTTGAAAATTTTGTACAGAGATTACTGGAGAATT ACCAGGATGGTGGACTAGAGATCACTTTCAGGAAAGACCACCTTGAGGCCTGCCTCCTTT CCCTGGGTTGCGACGTGATGGCCAGGGAACGCAGCAACTTCGAGAGCTACTCCATGTGTT ACGAGCATGTGTTGGAGCATGCTAGGCAAAAGCTCTGCCAGAAGGAGCAGGAATTAGACA TTATACGAAGAGGTCAGAGTCCACCTGAAGACAATGCTGGTCAGATTGCAGAGCTCAGTC ATAGTATGATCATGGAAATCACTGCCCTGAGAGCCCAACTCACAGATTTGGAGGAGGAGA GCCTGAATCTCAAAACTCAGATTAGAAAAGAAGTCCAAGAAGAATATGAAGCATTAGTCC AAGCTTTGTTTGTGACATGTTTACACATCAAAGAGAAGCTGGAGGAGAATCAACTTAATT TGATCCAGAAAGTATGTGAGCTCGTTGGCGAAGTAAGAACAGAAGGGATTGACAATATGA AGAACCTGAAGAAGAAGTGGGGCTCTGCCAGACCTGATGAAGAAATGCAAGAAAGCCCAG CCAAAGAGCAGCTGCGGGCCTTGGAGCAGGACAACTGTAGCCTGGCTGCCCTGGTGTGCA AAGTGAGGAGCCTGGGCCGCTGGAGGCTGGCAGCACAGCAGGAGCGCTTCCGGGGCCAGC TGAGCAAGGCTGAGAAGGAAGCTATGCAAAGTAAAAAAGAGTGTTTGAACATCAAGCTAA TGGCAGAACAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 131-249, + strand, RNAz p=0.861412 | |
| 703-821, - strand, RNAz p=0.792014 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 131-249, + strand, RNAz p=0.861412 | |
| 703-821, - strand, RNAz p=0.792014 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-129, gnl|bosTau2|chr9 (22964419-22964547) | |
| 1-129, gnl|canFam2|chr12 (69287197-69287457) | |
| 1-129, gnl|dasNov1|scaffold_28730 (50422-50679) | |
| 1-129, gnl|echTel1|scaffold_97009 (1573-1830) | |
| 1-129, gnl|hg17|chr6 (109741947-109742204) | |
| 1-129, gnl|Hg17|chr6 (109742059-109742187) | |
| 1-129, gnl|mm7|chr10 (41392066-41391805) | |
| 1-129, gnl|Mm7|chr10 (41391949-41391821) | |
| 1-129, gnl|monDom2|scaffold_0 (110955465-110955205) | |
| 1-129, gnl|oryCun1|scaffold_173077 (15557-15814) | |
| 1-129, gnl|panTro1|chr5 (112053635-112053892) | |
| 1-129, gnl|rheMac2|chr4 (154588753-154588496) | |
| 1-129, gnl|rn3|chr20 (45575939-45575679) | |
| 131-269, gnl|bosTau2|chr9 (22965477-22965615) | |
| 131-269, gnl|canFam2|chr12 (69288308-69288612) | |
| 131-269, gnl|dasNov1|scaffold_28730 (51483-51775) | |
| 131-269, gnl|echTel1|scaffold_155621 (2800-3087) | |
| 131-269, gnl|hg17|chr6 (109743106-109743404) | |
| 131-269, gnl|Hg17|chr6 (109743176-109743314) | |
| 131-269, gnl|loxAfr1|scaffold_1460 (71355-71681) | |
| 131-269, gnl|mm7|chr10 (41391100-41390816) | |
| 131-269, gnl|Mm7|chr10 (41391024-41390886) | |
| 131-269, gnl|monDom2|scaffold_0 (110953178-110952889) | |
| 131-269, gnl|oryCun1|scaffold_173077 (16590-16857) | |
| 131-269, gnl|panTro1|chr5 (112054792-112055090) | |
| 131-269, gnl|rheMac2|chr4 (154587618-154587320) | |
| 131-269, gnl|rn3|chr20 (45574965-45574671) | |
| 499-654, gnl|bosTau2|chr9 (22992133-22992288) | |
| 499-654, gnl|canFam2|chr12 (69306727-69306894) | |
| 499-654, gnl|dasNov1|scaffold_1452 (55793-55626) | |
| 499-654, gnl|echTel1|scaffold_291731 (35514-35348) | |
| 499-654, gnl|galGal2|chr3 (65375281-65375119) | |
| 499-654, gnl|hg17|chr6 (109764254-109764421) | |
| 499-654, gnl|Hg17|chr6 (109764262-109764417) | |
| 499-654, gnl|loxAfr1|scaffold_1460 (93640-93807) | |
| 499-654, gnl|mm7|chr10 (41371933-41371766) | |
| 499-654, gnl|Mm7|chr10 (41371923-41371768) | |
| 499-654, gnl|monDom2|scaffold_0 (110936258-110936091) | |
| 499-654, gnl|oryCun1|scaffold_173077 (37863-38030) | |
| 499-654, gnl|panTro1|chr5 (112077092-112077259) | |
| 499-654, gnl|rheMac2|chr4 (154568797-154568630) | |
| 499-654, gnl|rn3|chr20 (45553779-45553612) | |
| 499-654, gnl|xenTro1|scaffold_773 (390032-390191) | |
| 703-873, gnl|bosTau2|chr9 (22993583-22993753) | |
| 703-873, gnl|canFam2|chr12 (69308495-69308677) | |
| 703-873, gnl|dasNov1|scaffold_1452 (53539-53357) | |
| 703-873, gnl|echTel1|scaffold_291731 (33174-32992) | |
| 703-873, gnl|galGal2|chr3 (65372305-65372129) | |
| 703-873, gnl|hg17|chr6 (109766336-109766518) | |
| 703-873, gnl|Hg17|chr6 (109766342-109766512) | |
| 703-873, gnl|loxAfr1|scaffold_1460 (96843-97025) | |
| 703-873, gnl|mm7|chr10 (41366811-41366629) | |
| 703-873, gnl|Mm7|chr10 (41366803-41366633) | |
| 703-873, gnl|monDom2|scaffold_0 (110932909-110932729) | |
| 703-873, gnl|oryCun1|scaffold_173077 (40961-41143) | |
| 703-873, gnl|panTro1|chr5 (112080010-112080192) | |
| 703-873, gnl|rheMac2|chr4 (154566668-154566486) | |
| 703-873, gnl|rn3|chr20 (45548081-45547899) | |
| 703-873, gnl|xenTro1|scaffold_773 (394348-394529) | |
| 1026-1158, gnl|bosTau2|chr9 (22996030-22996162) | |
| 1026-1158, gnl|Hg17|chr6 (109769198-109769330) | |
| 1026-1158, gnl|Mm7|chr10 (41363868-41363733) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-129, gnl|bosTau2|chr9 (22964419-22964547) | |
| 1-129, gnl|canFam2|chr12 (69287197-69287457) | |
| 1-129, gnl|dasNov1|scaffold_28730 (50422-50679) | |
| 1-129, gnl|echTel1|scaffold_97009 (1573-1830) | |
| 1-129, gnl|hg17|chr6 (109741947-109742204) | |
| 1-129, gnl|Hg17|chr6 (109742059-109742187) | |
| 1-129, gnl|mm7|chr10 (41392066-41391805) | |
| 1-129, gnl|Mm7|chr10 (41391949-41391821) | |
| 1-129, gnl|monDom2|scaffold_0 (110955465-110955205) | |
| 1-129, gnl|oryCun1|scaffold_173077 (15557-15814) | |
| 1-129, gnl|panTro1|chr5 (112053635-112053892) | |
| 1-129, gnl|rheMac2|chr4 (154588753-154588496) | |
| 1-129, gnl|rn3|chr20 (45575939-45575679) | |
| 131-269, gnl|bosTau2|chr9 (22965477-22965615) | |
| 131-269, gnl|canFam2|chr12 (69288308-69288612) | |
| 131-269, gnl|dasNov1|scaffold_28730 (51483-51775) | |
| 131-269, gnl|echTel1|scaffold_155621 (2800-3087) | |
| 131-269, gnl|hg17|chr6 (109743106-109743404) | |
| 131-269, gnl|Hg17|chr6 (109743176-109743314) | |
| 131-269, gnl|loxAfr1|scaffold_1460 (71355-71681) | |
| 131-269, gnl|mm7|chr10 (41391100-41390816) | |
| 131-269, gnl|Mm7|chr10 (41391024-41390886) | |
| 131-269, gnl|monDom2|scaffold_0 (110953178-110952889) | |
| 131-269, gnl|oryCun1|scaffold_173077 (16590-16857) | |
| 131-269, gnl|panTro1|chr5 (112054792-112055090) | |
| 131-269, gnl|rheMac2|chr4 (154587618-154587320) | |
| 131-269, gnl|rn3|chr20 (45574965-45574671) | |
| 499-654, gnl|bosTau2|chr9 (22992133-22992288) | |
| 499-654, gnl|canFam2|chr12 (69306727-69306894) | |
| 499-654, gnl|dasNov1|scaffold_1452 (55793-55626) | |
| 499-654, gnl|echTel1|scaffold_291731 (35514-35348) | |
| 499-654, gnl|galGal2|chr3 (65375281-65375119) | |
| 499-654, gnl|hg17|chr6 (109764254-109764421) | |
| 499-654, gnl|Hg17|chr6 (109764262-109764417) | |
| 499-654, gnl|loxAfr1|scaffold_1460 (93640-93807) | |
| 499-654, gnl|mm7|chr10 (41371933-41371766) | |
| 499-654, gnl|Mm7|chr10 (41371923-41371768) | |
| 499-654, gnl|monDom2|scaffold_0 (110936258-110936091) | |
| 499-654, gnl|oryCun1|scaffold_173077 (37863-38030) | |
| 499-654, gnl|panTro1|chr5 (112077092-112077259) | |
| 499-654, gnl|rheMac2|chr4 (154568797-154568630) | |
| 499-654, gnl|rn3|chr20 (45553779-45553612) | |
| 499-654, gnl|xenTro1|scaffold_773 (390032-390191) | |
| 703-873, gnl|bosTau2|chr9 (22993583-22993753) | |
| 703-873, gnl|canFam2|chr12 (69308495-69308677) | |
| 703-873, gnl|dasNov1|scaffold_1452 (53539-53357) | |
| 703-873, gnl|echTel1|scaffold_291731 (33174-32992) | |
| 703-873, gnl|galGal2|chr3 (65372305-65372129) | |
| 703-873, gnl|hg17|chr6 (109766336-109766518) | |
| 703-873, gnl|Hg17|chr6 (109766342-109766512) | |
| 703-873, gnl|loxAfr1|scaffold_1460 (96843-97025) | |
| 703-873, gnl|mm7|chr10 (41366811-41366629) | |
| 703-873, gnl|Mm7|chr10 (41366803-41366633) | |
| 703-873, gnl|monDom2|scaffold_0 (110932909-110932729) | |
| 703-873, gnl|oryCun1|scaffold_173077 (40961-41143) | |
| 703-873, gnl|panTro1|chr5 (112080010-112080192) | |
| 703-873, gnl|rheMac2|chr4 (154566668-154566486) | |
| 703-873, gnl|rn3|chr20 (45548081-45547899) | |
| 703-873, gnl|xenTro1|scaffold_773 (394348-394529) | |
| 1026-1158, gnl|bosTau2|chr9 (22996030-22996162) | |
| 1026-1158, gnl|Hg17|chr6 (109769198-109769330) | |
| 1026-1158, gnl|Mm7|chr10 (41363868-41363733) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) |