Non-Coding RNA Search

Ss1.1-rova018_e6.5

Sequence:


               
               TAGGGGTTGAATTAGACCTACAGCCACTGGTCTATACCCCAGCCACAGCAACTCGGGCTC
TGAGCCGAGTCTGTGATCCACACCACAGCTCATGGCAATGCTGGATCCTTAACCCACTGA
ACAAGGCCAGGGATCGAACCCGTGTCGTCATGGATACTAGTCAGGTTCTTTAACCTCTGA
GCCATGATGGGAACTCCACCATTGAACCCTTGAGCACAAATATGTATCTGTATTTTTCTC
TAGCTTTTCAGTTGCTCACATACCCATGTCTGTGGAAAGTGACCTAAGTTTTTGGTCGAG
TTACATTTTATTGTATTTATTAGATTCACTTATCTGGATGACTGCAACAGAAATAAAAAT
TCACGTCTTTAGAAGCCAAACTGTGATGACCTGCTTTTGTTGGAATGAGACTGCTTGACT
TTTTGGCAGCTCCCCTTGGTTGGTAGATGGTTGAAACGGTTCGTTGATGCTCACAGCTGA
GTGTTTCGGGCTGTGGAATCATGGCATTGTCCCATCTTCAAGAATGACTCACCTTCTGCT
AGATTTCTGTATAGGATTTAGCAGCTTGCTGTGTCCTAAATTAGCTTCATTTCTGCCGAA
GTGCTCTTGTGTACACTGGTTTTGTAATTTGCCAAAGTACTAATTGGGGGTAGAGCACTT
CTGCAGCGGGTTGATGTCGTCACTGCTTGGACCATTGTTTTAAATGTATGTATTAGAGTT
GCACGCATACTGAAATCACATATCTCGGTGTTCAAAACAACATTCGAATAAAGGAAATGC
ATTAAACACTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGGTTGAATTAGACCTACAGCCACTGGTCTATACCCCAGCCACAGCAACTCGGGCTC
TGAGCCGAGTCTGTGATCCACACCACAGCTCATGGCAATGCTGGATCCTTAACCCACTGA
ACAAGGCCAGGGATCGAACCCGTGTCGTCATGGATACTAGTCAGGTTCTTTAACCTCTGA
GCCATGATGGGAACTCCACCATTGAACCCTTGAGCACAAATATGTATCTGTATTTTTCTC
TAGCTTTTCAGTTGCTCACATACCCATGTCTGTGGAAAGTGACCTAAGTTTTTGGTCGAG
TTACATTTTATTGTATTTATTAGATTCACTTATCTGGATGACTGCAACAGAAATAAAAAT
TCACGTCTTTAGAAGCCAAACTGTGATGACCTGCTTTTGTTGGAATGAGACTGCTTGACT
TTTTGGCAGCTCCCCTTGGTTGGTAGATGGTTGAAACGGTTCGTTGATGCTCACAGCTGA
GTGTTTCGGGCTGTGGAATCATGGCATTGTCCCATCTTCAAGAATGACTCACCTTCTGCT
AGATTTCTGTATAGGATTTAGCAGCTTGCTGTGTCCTAAATTAGCTTCATTTCTGCCGAA
GTGCTCTTGTGTACACTGGTTTTGTAATTTGCCAAAGTACTAATTGGGGGTAGAGCACTT
CTGCAGCGGGTTGATGTCGTCACTGCTTGGACCATTGTTTTAAATGTATGTATTAGAGTT
GCACGCATACTGAAATCACATATCTCGGTGTTCAAAACAACATTCGAATAAAGGAAATGC
ATTAAACACTTTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               201-797, gnl|bosTau2|chr6 (16475274-16475873)
               

               
               201-797, gnl|Hg17|chr4 (89536525-89535942)
               

               
               201-797, gnl|Mm7|chr6 (57470448-57469864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-797, gnl|bosTau2|chr6 (16475274-16475873)
               

               
               201-797, gnl|Hg17|chr4 (89536525-89535942)
               

               
               201-797, gnl|Mm7|chr6 (57470448-57469864)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (1.02407)
               

               
               hea (0.408998)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               hea (0.408998)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	201-797, gnl\|bosTau2\|chr6 (16475274-16475873)
	201-797, gnl\|Hg17\|chr4 (89536525-89535942)
	201-797, gnl\|Mm7\|chr6 (57470448-57469864)

	pro (1.02407)
	hea (0.408998)
	ova (0.258264)
	pan (0.23596)
	cmu (0.186393)
	fhi (0.169578)
	fat (0.147427)
	che (0.136314)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)