Non-Coding RNA Search

Ss1.1-rova018_o15.5

Sequence:


               
               GGCGTGCACTCTGCCTGCATTGCCAATGAAGTCCTCAACTGTTTAATATTTTGACATTAT
TTATAATCTATGAATTTAATATCTCTTTTGGAAAGACATTAATACTGCAGGTCTCTGAGA
GGAACCTTCCCATTCCCAAGGGGCTGATTTGCTGGGGATCTTTCATGGGATCCTTTTCAA
TCTACCAGGATCTAGACGAGCAGAATTCATCTTATCTTGTTGGAAAGAAGGCAAGTGTAA
AGGTCAGAGATGAAGTAGAAAAGCAGTGGAATAGAGTGGAAAGGATGCCAGGTGTGAAAT
GGAAATAGACAAGCCAGAGTACCCCCAAAGCAAGACGAGCAGGAGGTCTGGAAAGTGCCC
CAAGGAACAAAGCAACGATTTCCTCCTACAACCTTTGTACCCAAAGATTCTGTTGTGGAA
GGAAAGCAGGCTTCGGTGCACTTTATGTGGGAGAAGGAGGAGCAGGACTGGTGTTGCCCA
GTCCGTGCCAATATTAGGTATGTAGGCGGACAAGAACATACACCTACGGTTGTTTCCAAC
ACAATGAAGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTGCACTCTGCCTGCATTGCCAATGAAGTCCTCAACTGTTTAATATTTTGACATTAT
TTATAATCTATGAATTTAATATCTCTTTTGGAAAGACATTAATACTGCAGGTCTCTGAGA
GGAACCTTCCCATTCCCAAGGGGCTGATTTGCTGGGGATCTTTCATGGGATCCTTTTCAA
TCTACCAGGATCTAGACGAGCAGAATTCATCTTATCTTGTTGGAAAGAAGGCAAGTGTAA
AGGTCAGAGATGAAGTAGAAAAGCAGTGGAATAGAGTGGAAAGGATGCCAGGTGTGAAAT
GGAAATAGACAAGCCAGAGTACCCCCAAAGCAAGACGAGCAGGAGGTCTGGAAAGTGCCC
CAAGGAACAAAGCAACGATTTCCTCCTACAACCTTTGTACCCAAAGATTCTGTTGTGGAA
GGAAAGCAGGCTTCGGTGCACTTTATGTGGGAGAAGGAGGAGCAGGACTGGTGTTGCCCA
GTCCGTGCCAATATTAGGTATGTAGGCGGACAAGAACATACACCTACGGTTGTTTCCAAC
ACAATGAAGTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-183, - strand, RNAz p=0.990451
               

               
               344-462, + strand, RNAz p=0.868008

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-183, - strand, RNAz p=0.990451
               

               
               344-462, + strand, RNAz p=0.868008

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-550, gnl|bosTau2|chr1 (75220944-75220398)
               

               
               1-550, gnl|Hg17|chr3 (150719671-150719134)
               

               
               1-550, gnl|Mm7|chr3 (57584686-57584146)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-550, gnl|bosTau2|chr1 (75220944-75220398)
               

               
               1-550, gnl|Hg17|chr3 (150719671-150719134)
               

               
               1-550, gnl|Mm7|chr3 (57584686-57584146)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	75-183, - strand, RNAz p=0.990451
	344-462, + strand, RNAz p=0.868008

	1-550, gnl\|bosTau2\|chr1 (75220944-75220398)
	1-550, gnl\|Hg17\|chr3 (150719671-150719134)
	1-550, gnl\|Mm7\|chr3 (57584686-57584146)