Non-Coding RNA Search

Ss1.1-rova020_e22.5

Sequence:


               
               CCCCTATTCTGGAAAAACTGCAGGAAATAGATAAGAGAAAACCTCAAGACACTACTGAGC
TTCAGATCTTTCAAGAAGGGATAAAGGTCTTGGAGGCACTGGTAGCCATTGCTGAAGAAC
AGCATCGCTCTCAGCTGGTGGCCTGTCTTCTGCCTATCCTCATTTCCTTCCTTTTGGATG
AGAATGCTCTAGGATCAGCAACTTCCATAATGAGAAATCTACATGACTTTGCTTTGCAAA
AGCTCATGCAGATTGGGCCTCAGTATTCTTCAGTTTTTAAAAGTGTAATGGCTTCTTCTC
CAGCCTTGAAAGCACGACTTGAAGCTGCTATAAAGGGCAATCAAGAAAGTGTCAAAGTCA
AGATACCAACATCTAAACATACTAAGAACTCTGGAAAGAATTTAAGCATCCAATTAAAGA
CCAACTTCCTCTGATGTTATTTCTCTTAATAGTTAAGCACCTTAACACAATACTTGATCA
TTTCCTTCTCTTTGGGGGCAAAAGTGACATTTTAGACACAAGTGCACTTGGAGGTCTGTT
TTTTTGTTTTAACTTAAATAACTTACTTTGAAAAGTCAACAGCAAACCTAGCATTTTTTT
GTGTGGGTTTTTTGTGTTTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTATTCTGGAAAAACTGCAGGAAATAGATAAGAGAAAACCTCAAGACACTACTGAGC
TTCAGATCTTTCAAGAAGGGATAAAGGTCTTGGAGGCACTGGTAGCCATTGCTGAAGAAC
AGCATCGCTCTCAGCTGGTGGCCTGTCTTCTGCCTATCCTCATTTCCTTCCTTTTGGATG
AGAATGCTCTAGGATCAGCAACTTCCATAATGAGAAATCTACATGACTTTGCTTTGCAAA
AGCTCATGCAGATTGGGCCTCAGTATTCTTCAGTTTTTAAAAGTGTAATGGCTTCTTCTC
CAGCCTTGAAAGCACGACTTGAAGCTGCTATAAAGGGCAATCAAGAAAGTGTCAAAGTCA
AGATACCAACATCTAAACATACTAAGAACTCTGGAAAGAATTTAAGCATCCAATTAAAGA
CCAACTTCCTCTGATGTTATTTCTCTTAATAGTTAAGCACCTTAACACAATACTTGATCA
TTTCCTTCTCTTTGGGGGCAAAAGTGACATTTTAGACACAAGTGCACTTGGAGGTCTGTT
TTTTTGTTTTAACTTAAATAACTTACTTTGAAAAGTCAACAGCAAACCTAGCATTTTTTT
GTGTGGGTTTTTTGTGTTTCTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7512613|pir||T17281

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7512613|pir||T17281

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               167-326, - strand, RNAz p=0.906587

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-326, - strand, RNAz p=0.906587

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               127-624, gnl|bosTau2|chr21 (26428805-26428312)
               

               
               127-624, gnl|Hg17|chr14 (30832569-30832063)
               

               
               127-624, gnl|Mm7|chr12 (49890469-49889999)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-624, gnl|bosTau2|chr21 (26428805-26428312)
               

               
               127-624, gnl|Hg17|chr14 (30832569-30832063)
               

               
               127-624, gnl|Mm7|chr12 (49890469-49889999)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	127-624, gnl\|bosTau2\|chr21 (26428805-26428312)
	127-624, gnl\|Hg17\|chr14 (30832569-30832063)
	127-624, gnl\|Mm7\|chr12 (49890469-49889999)

	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	cty (0.10408)
	jej (0.0989218)