Non-Coding RNA Search

Ss1.1-rova020_n5.5

Sequence:


               
               CTTACCCCAACTTTCGTGTATTACCCTCTACAGTATACTTTTTATTGAGCACTTTGCTGC
TGAAATGCTGCCTCTTGCCTTTTTTTTTTTTTAATTTTAAATTATCTAAATTTATTGTTT
GTTATGATGTCTATAGCAATGTTTTTCTCTCAGTTTCCTCCCCCATCCCATCCCTGCCTT
GGACTCATTTGAGAAGACTTGAGAAATGTCTTAATACTCACACTGCTGCATGTAGCTCTT
GCTTATTTACTGGTCGGGGGAAACAGGATGTGTTTCCTTTTTCAAAAAAGCCAATTGACA
GAACAGATGACTACACTGAAATACTCCTCCTTTTGTATTATTCAGTCTTTTGTTTTAGTT
CGGTAAGTTTTAAGAAATTTCAGCAGCAAAGTTGTTATTCAGTGGGCACGATGGACTGTA
GATGCCTCGAGTTATGTATACCTGTCCCAGCTGTAAACTTCATTGTCCTTTGTTGGATGA
TATTTTAAATGGATATAATAAATTGGTCTAAAGGGCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACCCCAACTTTCGTGTATTACCCTCTACAGTATACTTTTTATTGAGCACTTTGCTGC
TGAAATGCTGCCTCTTGCCTTTTTTTTTTTTTAATTTTAAATTATCTAAATTTATTGTTT
GTTATGATGTCTATAGCAATGTTTTTCTCTCAGTTTCCTCCCCCATCCCATCCCTGCCTT
GGACTCATTTGAGAAGACTTGAGAAATGTCTTAATACTCACACTGCTGCATGTAGCTCTT
GCTTATTTACTGGTCGGGGGAAACAGGATGTGTTTCCTTTTTCAAAAAAGCCAATTGACA
GAACAGATGACTACACTGAAATACTCCTCCTTTTGTATTATTCAGTCTTTTGTTTTAGTT
CGGTAAGTTTTAAGAAATTTCAGCAGCAAAGTTGTTATTCAGTGGGCACGATGGACTGTA
GATGCCTCGAGTTATGTATACCTGTCCCAGCTGTAAACTTCATTGTCCTTTGTTGGATGA
TATTTTAAATGGATATAATAAATTGGTCTAAAGGGCAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr11 (77003666-77003154)
               

               
               1-516, gnl|Hg17|chr9 (124991465-124990961)
               

               
               1-516, gnl|Mm7|chr2 (39204613-39204109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr11 (77003666-77003154)
               

               
               1-516, gnl|Hg17|chr9 (124991465-124990961)
               

               
               1-516, gnl|Mm7|chr2 (39204613-39204109)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ova (0.129132)

	1-516, gnl\|bosTau2\|chr11 (77003666-77003154)
	1-516, gnl\|Hg17\|chr9 (124991465-124990961)
	1-516, gnl\|Mm7\|chr2 (39204613-39204109)